Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02415 ATGCATCAGGAGCAAGAGGATATGAGGAACTACGAAGCATGTAAGGAGGATTACATGCAAATCATGAAGGGCAAGCGCACGAAGCGTCAAAGGCTTCCATCACCACTTAGGTTAACCATGTCAACAACATGTTCAAGCGCAGGAAGAAGCAGCACCGACAACTCCATAGGATTTGATCATCTCCCTACAACCTCAAGGAACGAGGAGGAGGACATGGCCAATTGTTTGATTCTCTTAGCTCAGGGCCACAACGCCCCAAAACCCTCACGCAAGTCACCACCACACGTGGCAGCACCTGGTGATCACAATAACAATGAAGGGCTATATCTTTATGAGTGCAAAACCTGTAACCGATGCTTCCCTTCATTTCAAGCCCTTGGTGGCCACAGAGCCAGCCACAAGAAATCTAAGACAAGCACAGAAGAAAAGCAAGGAGTGATTACCACTTTTGGGAATGAAGTGGATCATCATAAGCACCATGGTGATTGTGACCATCCCACAAGCACCAACCTCACCTTGCAATTATCAACGGCTTTGTATAATAATAACAGCAGCACTAGGACTATTGTTAATGCTAAATCCAAAGTTCATGAGTGTTCCATATGTGGGGCAGAATTCACATCAGGGCAAGCCTTGGGGGGACACATGAGAAGGCATAGAAATCTTCTGAGCACGCCCACAACAGTATCTACAATTAGGGCAAATGGTGGTGATGGGAGTCCTGAGGTTAAACACAAAGATGTTTTGGACTTGGACCTTAATCTTCCGGCACCTGAGGATGATCACAGAGAATCCAAGCCGTTTCCTTTTCAGTCCAAAGGAAAAGTCATTGCCTTCTCAGCTACTTCTTTGGTGGATTGCCATTACTAA 870 0.4598 MHQEQEDMRNYEACKEDYMQIMKGKRTKRQRLPSPLRLTMSTTCSSAGRSSTDNSIGFDHLPTTSRNEEEDMANCLILLAQGHNAPKPSRKSPPHVAAPGDHNNNEGLYLYECKTCNRCFPSFQALGGHRASHKKSKTSTEEKQGVITTFGNEVDHHKHHGDCDHPTSTNLTLQLSTALYNNNSSTRTIVNAKSKVHECSICGAEFTSGQALGGHMRRHRNLLSTPTTVSTIRANGGDGSPEVKHKDVLDLDLNLPAPEDDHRESKPFPFQSKGKVIAFSATSLVDCHY 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02415 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 111 138 IPR013087 -
Cca03g02415 289 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 5 289 - -
Cca03g02415 289 ProSitePatterns Zinc finger C2H2 type domain signature. 113 133 IPR013087 -
Cca03g02415 289 SMART c2h2final6 111 133 IPR013087 -
Cca03g02415 289 SMART c2h2final6 197 219 IPR013087 -
Cca03g02415 289 ProSitePatterns Zinc finger C2H2 type domain signature. 199 219 IPR013087 -
Cca03g02415 289 PANTHER ZINC FINGER PROTEIN ZAT5 5 289 - -
Cca03g02415 289 SUPERFAMILY beta-beta-alpha zinc fingers 110 219 IPR036236 -
Cca03g02415 289 Pfam C2H2-type zinc finger 196 220 - -
Cca03g02415 289 Pfam C2H2-type zinc finger 111 135 - -
Cca03g02415 289 Gene3D Classic Zinc Finger 174 234 - -
Cca03g02415 289 ProSiteProfiles Zinc finger C2H2 type domain profile. 197 219 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02415 Cca-Chr3 45233182 45234310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02415 17 289 C2H2 Transcription Factor Family AT2G28200 44.746 4.27e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca03g02415 zf-C2H2_6 2.4e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02415 - - gsj:114399832 391.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02415 03 45233182 45234310 Cca02g01901 02 38354083 38355761 ECH
Cca03g02415 03 45233182 45234310 Cca03g02415 03 45233182 45234310 ECH
Cca03g02415 03 45233182 45234310 Cca10g00562 10 6108652 6109548 ECH
Cca03g02415 03 45233182 45234310 Cca02g00460 02 9756771 9757766 PCT