Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02414 ATGCCGATCCGTAACATCGCCGTTGGAAGGCCCGAAGAGGTAACTCACCCCGACACGTTGAAGGCGGCGTTGGCTGAGTTCATCTCCACGCTCATCTTCGTCTTCGCCGGTTCAGGCTCCGGCATCGCCTACAACAAGCTCACCGACAACGGCGCCGCCACCCCCGCTGGTCTGATCTCCGCCGCCATCGCCCATGCATTCGCCCTCTTCGTGGCCGTGTCCGTGGGCGCCAACATCTCCGGCGGCCACGTGAACCCCGCCGTGACCTTCGGCGCCTTCGTGGGCGGCAACATCACCTTCCTTCGCGGCATCGCGTACGTCATCGCCCAGCTCCTGGGGTCCATCGTGGCCTCCTTGCTCCTGGCCTTCGTCACCGCTTCGTCTGTTCCAGCTTTCGGGCTCTCCGCTGGAGTTGGCGTGGGGAACGCTTTGGTGTTGGAGATCGTGATGACCTTTGGGTTGGTGTACACGGTGTACGCTACAGCCGTTGACCCCAAGAAGGGCAGTTTGGGAACTATTGCTCCCATCGCAATTGGTTTCATCGTTGGCGCTAACATTCTGTTGGGTGGGGCCTTCGATGGAGCATCCATGAACCCGGCCGTTTCTTTTGGGCCTGCAGTCGTCAGCTGGACCTGGGACAACCACTGGATCTACTGGGTTGGGCCTCTCATCGGTGGTGGGCTCGCTGGGCTTATCTACGAGGTCGTCTTCATCAGCCACACCCACGAGCAGCTCCCCACCACTGACTACTAG 753 0.6109 MPIRNIAVGRPEEVTHPDTLKAALAEFISTLIFVFAGSGSGIAYNKLTDNGAATPAGLISAAIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITFLRGIAYVIAQLLGSIVASLLLAFVTASSVPAFGLSAGVGVGNALVLEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILLGGAFDGASMNPAVSFGPAVVSWTWDNHWIYWVGPLIGGGLAGLIYEVVFISHTHEQLPTTDY 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02414 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Cca03g02414 250 PANTHER AQUAPORIN-8 1 250 IPR034294 -
Cca03g02414 250 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca03g02414 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca03g02414 250 PANTHER AQUAPORIN TIP1-1 1 250 - -
Cca03g02414 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca03g02414 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca03g02414 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca03g02414 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca03g02414 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca03g02414 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca03g02414 250 SUPERFAMILY Aquaporin-like 12 246 IPR023271 -
Cca03g02414 250 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02414 Cca-Chr3 45212839 45213674 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02414 1 250 Major Intrinsic Protein MIP AT2G36830 82.470 2.48e-147 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02414 K09873 - gmx:100527509 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02414 03 45212839 45213674 Cca03g02414 03 45212839 45213674 ECH
Cca03g02414 03 45212839 45213674 Cca02g00459 02 9744566 9748577 PCT