Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02411 ATGCTCCAAACAACCTGCATTTTGCTGCTCTCAGTCCTCACCTCCTTTTCACCTCTTGCAACTGCAATGCTCAACCTAACTCTTCCCGGAGCACACCCAGACCCAGAAGCTGTTGCCCACGAAGTTCATAGGAAGGTTAATGCTTCGATTGCAAGAAGGGAAATGCTGGCAGTGTCAGAGAAAGACGAGTCATCGTGTTTAACGGGTAACCCCATCGATGATTGTTGGAAATGTGACCCAGATTGGCCCAATAACCGGCAGAGATTAGCAGACTGCGCCATTGGGTTTGGTCAGTATGCCAAGGGAGGGAAAGGTGGTGAGTTTTATGTTGTCACTGACTCCTCTGATGATGACCCTGTTAACCCAAGACCTGGCACGCTTAGATACGCAGTCATACAGAACGAGCCACTGTGGATCGTGTTCCCTAGTAACATGATGATTAAGCTCTCTCAAGAGCTTATTTTTAACAGCTATAAGACCATCGATGGACGCGGCGCTGATGTGCACATTGTCGGAGGAGGCTGCATTACTTTGCAGTATATAAGCAATGTTATCATACACAATATTCATATCCATCATTGTCATCCCTCAGGGAACACCAACGTTCGATCAAGTCCAGAGCACTACGGTTTTCGGACAGAATCAGACGGTGACGGGATTTCCATATTCGGGTCAAAGGACATATGGATTGACCACTGCACGCTATCACGGTGCAAGGATGGGCTCATAGACGCGGTGATGGGTTCCACCGGAATAACCATCTCCAACAACTTCCTCTCCCACCACAATGAGGTCATGCTCCTTGGCCACAGCGACGACTACCTCCCGGACTCAGGAATGCAGGTCACCATCGCCTTCAACCACTTCGGGGAGAAGCTCGTCCAGCGAATGCCGCGGTGCCGGAGGGGCTACATCCATGTGGTCAACAACGACTTCACTCAGTGGGAGATGTATGCCATTGGGGGCAGTGGTGAGCCCACCATTAACAGCCAGGGCAACCGCTACTACGCACCACAGAACCCCTTTGCCAAGGAGGTTACTAAGAGAGTTGACACACAACAGTCCAAGTGGAAGGGATGGAACTGGAGGTCTGAGGGTGATATTCTGCTCAATGGAGCTTTCTTTGTTGCTTCTGGGGAAGGACTTGAGGTTAAGTATGAGAAGGCATACAGCGTTGAGCCTAAGTCTGCTGATCGCATTACTTTTCTCACCATGTCCGCAGGTGTTCTTGGCAATGCTAGGGATAACAACCTTGGAATGTGGAGCAGAGGACCTGGGGATGATGCTCCCGATTCCAGCTTTGAATACACCGATGACATGTCCTTCACTGCAACGATGCTTCTGCCATCTTTTCTTCTCTTGTTCTCTTGCACAATACTGTTGACGGTTATTCTATGA 1398 0.4971 MLQTTCILLLSVLTSFSPLATAMLNLTLPGAHPDPEAVAHEVHRKVNASIARREMLAVSEKDESSCLTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQYAKGGKGGEFYVVTDSSDDDPVNPRPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTNVRSSPEHYGFRTESDGDGISIFGSKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNFLSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGEPTINSQGNRYYAPQNPFAKEVTKRVDTQQSKWKGWNWRSEGDILLNGAFFVASGEGLEVKYEKAYSVEPKSADRITFLTMSAGVLGNARDNNLGMWSRGPGDDAPDSSFEYTDDMSFTATMLLPSFLLLFSCTILLTVIL 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02411 465 SUPERFAMILY Pectin lyase-like 65 399 IPR011050 -
Cca03g02411 465 PANTHER PECTATE LYASE 12-RELATED 1 426 - -
Cca03g02411 465 SMART amb_all 144 341 IPR002022 -
Cca03g02411 465 PANTHER PECTATE LYASE 18-RELATED 1 426 IPR045032 GO:0030570
Cca03g02411 465 Pfam Pectate lyase 153 329 IPR002022 -
Cca03g02411 465 Gene3D - 69 411 IPR012334 -
Cca03g02411 465 PRINTS Pollen allergen Amb family signature 92 109 IPR018082 -
Cca03g02411 465 PRINTS Pollen allergen Amb family signature 116 141 IPR018082 -
Cca03g02411 465 PRINTS Pollen allergen Amb family signature 152 168 IPR018082 -
Cca03g02411 465 PRINTS Pollen allergen Amb family signature 216 237 IPR018082 -
Cca03g02411 465 PRINTS Pollen allergen Amb family signature 296 315 IPR018082 -
Cca03g02411 465 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Cca03g02411 465 PRINTS Pollen allergen Amb family signature 360 384 IPR018082 -
Cca03g02411 465 PRINTS Pollen allergen Amb family signature 389 412 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02411 Cca-Chr3 45181239 45184174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02411 1 454 Polysaccharide Lyase AT3G53190 76.304 0.0 693
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02411 K01728 - gmx:100775595 884.019
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02411 03 45181239 45184174 Cca03g02411 03 45181239 45184174 ECH
Cca03g02411 03 45181239 45184174 Cca02g00456 02 9663589 9666162 PCT