Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02395 ATGGGTAGAGCTCCTTGCTGTGACAAGGCAAATGTGAAGAAAGGACCATGGTCACCAGAAGAAGATGCGAAGCTAAGGGAGTACATAGAGAAACATGGCACCGGAGGGAACTGGATTGCCCTTCCACAAAAAGTTGGTTTGAAAAGATGCGGCAAGAGCTGTAGACTAAGGTGGCTTAATTATCTTAGACCCAACATTAAGCATGGCCAGTTTTCTGATGTAGAAGATAAAATAATCTGCAGCCTCTTTGCTAGCATTGGAAGCAGGTGGTCCATAATAGCATCTCAGTTGCCAGGGAGGACTGACAATGATATCAAGAACTACTGGAACACCAAGCTTAAGAAGAAAATGATGGCCATGAATGCTTCACCACAGAGAAAGCCTCAACAAATGACCCTTTTGTCCATCCTTCAAAGCTCAACATCATCTTCAACATTGTCCTTCAGAGACAGCAACAACTCATACTACCACCCCCAAGGGTCCTTTTCCTACTCCTCAAGTCTTCTGAGTGGAAATAACTCTTCTGTTTCTGCTTCCGCTGATTCCTTTTTTCAAGCACAAGAGAGTTTGGGGGTGAAGTGCCAATTCAAAGATAGCATTAGCAACAATAGCACCTTTGTGTTTGGGGAGTTTGGTGATGCAACTTTTGTTGGGGCTAACCACCTCTACAGTGTGGCGGAAGATACTACTCACAAGTTGATGTTCTCCAATGCTGCTAGTGGTAGTGTTAGTGGGTGGACAGACAAACAAAATGGATTGTGGGAACAAAATCCTTTGGATTATGGCGATCTAGAGGAAATTAAACAGTTAATTGGCACTAATAACAGTTGCAATAATAACTTTTTGTTTGATGACAAGAAGACAGAGGAAAGGGTCTCGTACTACTGA 888 0.4302 MGRAPCCDKANVKKGPWSPEEDAKLREYIEKHGTGGNWIALPQKVGLKRCGKSCRLRWLNYLRPNIKHGQFSDVEDKIICSLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMAMNASPQRKPQQMTLLSILQSSTSSSTLSFRDSNNSYYHPQGSFSYSSSLLSGNNSSVSASADSFFQAQESLGVKCQFKDSISNNSTFVFGEFGDATFVGANHLYSVAEDTTHKLMFSNAASGSVSGWTDKQNGLWEQNPLDYGDLEEIKQLIGTNNSCNNNFLFDDKKTEERVSYY 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02395 295 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Cca03g02395 295 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Cca03g02395 295 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Cca03g02395 295 Gene3D - 69 133 - -
Cca03g02395 295 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Cca03g02395 295 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Cca03g02395 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Cca03g02395 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Cca03g02395 295 Gene3D - 7 68 - -
Cca03g02395 295 PANTHER OS09G0431300 PROTEIN 1 271 - -
Cca03g02395 295 CDD SANT 16 62 IPR001005 -
Cca03g02395 295 PANTHER OS09G0431300 PROTEIN 1 271 - -
Cca03g02395 295 SMART sant 13 64 IPR001005 -
Cca03g02395 295 SMART sant 67 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02395 Cca-Chr3 45036560 45038162 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02395 1 127 MYB Transcription Factor Family AT5G57620 81.102 1.24e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca03g02395 Myb_DNA-binding 2.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02395 K09422 - gmx:778084 410.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02395 03 45036560 45038162 Cca03g02395 03 45036560 45038162 ECH