Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02394 ATGTCAAAAGATTCTGAGGAGATAAAAGCCACTGAGCAGTGGAAATGGTCCGAAATGCAAGGCCTTGAGCTTGTTTCTGATGCCCCTTCACAACAAAACCAAGTTCAGAGTGAAATGAACACTAGTAGTTCTGATGTTGAACCACCCAACAAAGATGTTTCTTTTTCTGTTTCTGCTTCAGCAGCAGGTGAGAACAAGGGTGGTTCCATTAGTGGGGAGAAAGGAGAGAGTGTTGGGTCTGTGGGGTTCGGAGAGCTTTTCAGATTCGCTGATGGGTTGGACTATGTTCTTATGGGAATTGGAACGGTTGGAGCGGTTGTGCACGGTTGTTCTCTGCCTCTCTTTCTACGGTTCTTCGCGGATCTTGTCAATTCCTTCGGCTCCAATGCTAATGATGTCGACAAGATGACAAGGGAAGTGGTCAAGTATGCATTTTACTTCCTGGTGGTGGGGGCTGCTATTTGGGCATCTTCATGGGCAGAGATTTCGTGTTGGATGTGGAGCGGGGAGCGTCAATCGACCAAGATGAGAATCAAGTATCTGGAAGCTGCCTTGAACCAGGATATTCAGTTCTTTGACACTGAGGTTCGAACTTCAGATGTTGTTTTTGCCATCAACACTGATGCTGTCATGGTCCAGGACGCCATTAGTGAAAAGTTGGGGAATTTCATTCACTACATGGCTACTTTTGTTTCTGGTTTTGTTGTGGGTTTCACTGCTGTGTGGCAATTGGCTTTGGTAACTCTTGCTGTTGTGCCTATGATAGCTGTGATCGGAGGCATTCACACTGCCACCTTGGCCAAGCTCTCTGGTAAGAGCCAGGAGGCTCTTTCTCAAGCTGGCAACATTGTGGAACAGACTATTGCACAAATCCGGGTAGTGCTGGCCTTTGTTGGAGAATCCAGGGCATTGCAAGCCTATTCATCTGCATTGAGGGTTGCACAGAAGATTGGCTACAAAACTGGGTTTGCAAAGGGAATGGGATTGGGTGCCACTTACTTTGTTGTTTTCTGCTGTTATGCACTTCTGCTGTGGTATGGAGGCTATCTGGTTAGGCACCACGCCACCAATGGAGGACTTGCCATTGCAACCATGTTTGCTGTTATGATAGGGGGATTGGGTTTAGGGCAATCTGCACCAAGCATGGCTGCATTTACAAAGGCCAGAGTTGCTGCTGCGAAGATTTTCCGAATAATTGATCACAAGCCGGTTATAGATCGAAATAGTGAATCTGGCATGGAACTAGACACAGTTACTGGACTTGTGGAATTGAAAAATGTGGATTTTTCTTACCCATCTAGGCCGGAGGTTCGGATCCTCAATGATTTCTCCTTGAATGTGCCTGCTGGCAAGACCATAGCTTTGGTGGGTAGCAGTGGCTCTGGCAAGAGCACTGTTGTCTCCCTCATTGAGAGATTCTATGATCCAACTTCAGGACAAGTTCTGTTAGATGGGCATGATATTAAAACTTTAAAGCTTAAATGGCTGAGGCAGCAGATAGGACTAGTTAGCCAAGAGCCTGCTTTGTTTGCTACCACAATAAGAGAAAATATACTGTTGGGTAGGCCTGATGCAGACCAGGTTGAGATTGAAGAAGCTGCTAGGGTTGCTAATGCTCATTCATTCATCATTAAACTTCCTGATGGCTATGAAACCCAGGTGGGAGAAAGAGGGCTGCAACTTTCTGGAGGGCAAAAACAGAGAATAGCAATAGCAAGGGCAATGCTGAAAAACCCTGCAATTCTTCTCCTAGATGAGGCAACAAGTGCATTGGACTCAGAGTCGGAAAAGCTGGTGCAAGAAGCCCTTGACCGGTTCATGATTGGCAGAACAACTCTAGTGATTGCTCATCGCCTCTCCACTATTCGCAAAGCTGACCTTGTAGCAGTACTTCAGCAAGGAAGTGTTTCTGAAATTGGAACTCATGATGAGCTCTTCTCAAAAGGTGAAAATGGAGTCTATGCCAAGCTTATAAAGATGCAGGAGATGGCTCATGAAACAGCCATGAGTAATGCTAGAAAGAGTAGTGCAAGGCCTTCAAGTGCTAGAAACTCTGTAAGCTCACCAATAATTGCTAGGAATTCTTCTTATGGACGGTCACCATACTCACGTAGGCTATCTGATTTCTCTACATCCGATTTTAGTCTCTCCCTTGATGCATCACATCCAAGTTACAGGCTTGAAAAGCTAGCTTTTAAAGAGCAAGCTAGTTCCTTCTGGAGACTTGCAAAAATGAACTCTCCTGAATGGCTTTATGCTTTAATTGGCTCTATAGGGTCTGTTGTTTGTGGATCCCTCAGTGCATTCTTTGCTTATGTTCTTAGTGCTGTCCTCAGTGTGTACTACAATCCAGACCACAGATACATGATCCGCCAAATAGAGAAGTACTGCTACTTGTTGATTGGCCTTTCATCAACTGCACTTCTCTTCAACACGTTGCAACACTTCTTCTGGGACATTGTTGGGGAAAATCTTACGAAACGTGTGAGGGAGAAAATGCTGACGGCCGTGCTCAAAAATGAAATGGCATGGTTTGATCAGGAGGAAAATGAGAGTGCCAGGATTGCTGCAAGGCTTGCTCTTGATGCCAACAATGTCAGATCAGCCATTGGAGATCGAATTTCAGTAATTGTGCAGAACACTGCACTTATGCTAGTCGCTTGCACTGCCGGGTTTGTGTTGCAGTGGCGCCTTGCCCTTGTCCTCATAGCCGTCTTTCCTGTAGTTGTTGCAGCCACCGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGACATGGAAGCGGCTCATGCTAAGGCCACACAACTAGCAGGAGAAGCTATAGCCAATGTAAGGACTGTTGCAGCCTTCAATTCAGAAGCAAAAATTGTTGGCCTTTTCACCTCCAATCTCCAAGCTCCACTACAGCGTTGTTTTTGGAAGGGACAAATCTCTGGAAGTGGATATGGTGTAGCTCAGTTTGCACTTTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGCTAGTGAAGCATGGCATCTCTGACTTCTCTAAAACAATCCGAGTTTTCATGGTCCTAATGGTTTCTGCAAATGGTGCTGCTGAGACTTTAACTCTGGCTCCTGACTTTATCAAAGGTGGCCGAGCCATGAGGTCAGTCTTTGAGCTCCTAGACCGCCGAACCGAAATTGAACCTGATGATCAAGATGCTACTCCTGTTCCTGATCGCCTTCGTGGCGAAGTTGAGCTCAAGCATGTAGACTTCTCTTATCCAACTCGCCCTGATATGCCAGTTTTTCGCGACCTCAGCCTTCGTGCCAGGGCTGGTAAAACTCTTGCACTTGTAGGACCAAGTGGCTGTGGTAAGAGCTCAGTTATTGCACTTATACAGAGATTCTATGATCCAACATCTGGTAGAGTCATGATTGATGGCAAGGACATCAGAAAATACAACCTCAAGTCCTTAAGAAGGCACATTTCTGTGGTACCACAGGAGCCATGCTTGTTTGCTACTACTATCTATGAAAACATTGCTTATGGCCATGACTCAGCCACTGAAGCTGAGATAATTGAAGCTGCAACTCTTGCCAATGCACACAAGTTCATATCTGCTTTGCCAGATGGATACAAAACGTTTGTTGGTGAGAGAGGTGTTCAACTCTCTGGGGGACAAAAGCAAAGAATTGCGGTTGCTCGTGCTTTTGTGAGGAAGGCTGAACTTATGCTCCTTGATGAGGCCACAAGTGCACTTGATGCTGAATCTGAGAGGTCAGTTCAGGAAGCTCTAGACCGTGCTGCCGCAGGAAAAACAACTATTGTTGTTGCACACAGGCTATCAACTATCAGAAATGCCAATGTGATTGCTGTGATCGATGATGGGAAAGTAGCTGAGCAAGGTTCACATTCACAGTTGTTGAAAAATCACCCTGATGGGATATATGCACGCATGATTCAGCTACAAAGGTTCACACACAGCCAAGTCATTGGAATGGCCTCAGGTTCAAGTTCTTCAACAAGGCCAAAAGATGATGAAAGAGAAGGCTAG 4032 0.4566 MSKDSEEIKATEQWKWSEMQGLELVSDAPSQQNQVQSEMNTSSSDVEPPNKDVSFSVSASAAGENKGGSISGEKGESVGSVGFGELFRFADGLDYVLMGIGTVGAVVHGCSLPLFLRFFADLVNSFGSNANDVDKMTREVVKYAFYFLVVGAAIWASSWAEISCWMWSGERQSTKMRIKYLEAALNQDIQFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGGIHTATLAKLSGKSQEALSQAGNIVEQTIAQIRVVLAFVGESRALQAYSSALRVAQKIGYKTGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHATNGGLAIATMFAVMIGGLGLGQSAPSMAAFTKARVAAAKIFRIIDHKPVIDRNSESGMELDTVTGLVELKNVDFSYPSRPEVRILNDFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKTLKLKWLRQQIGLVSQEPALFATTIRENILLGRPDADQVEIEEAARVANAHSFIIKLPDGYETQVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEMAHETAMSNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHPSYRLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSVVCGSLSAFFAYVLSAVLSVYYNPDHRYMIRQIEKYCYLLIGLSSTALLFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMTGFSGDMEAAHAKATQLAGEAIANVRTVAAFNSEAKIVGLFTSNLQAPLQRCFWKGQISGSGYGVAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMRSVFELLDRRTEIEPDDQDATPVPDRLRGEVELKHVDFSYPTRPDMPVFRDLSLRARAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHDSATEAEIIEAATLANAHKFISALPDGYKTFVGERGVQLSGGQKQRIAVARAFVRKAELMLLDEATSALDAESERSVQEALDRAAAGKTTIVVAHRLSTIRNANVIAVIDDGKVAEQGSHSQLLKNHPDGIYARMIQLQRFTHSQVIGMASGSSSSTRPKDDEREG 1343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02394 1343 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 422 658 IPR003439 GO:0005524
Cca03g02394 1343 Pfam ABC transporter transmembrane region 755 1024 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca03g02394 1343 Pfam ABC transporter transmembrane region 99 372 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca03g02394 1343 PANTHER ABC TRANSPORTER B FAMILY MEMBER 1 98 1320 - -
Cca03g02394 1343 Gene3D - 1068 1323 IPR027417 -
Cca03g02394 1343 ProSitePatterns ABC transporters family signature. 1216 1230 IPR017871 GO:0005524
Cca03g02394 1343 SUPERFAMILY ABC transporter transmembrane region 86 406 IPR036640 GO:0005524|GO:0016021
Cca03g02394 1343 MobiDBLite consensus disorder prediction 21 54 - -
Cca03g02394 1343 Gene3D - 420 685 IPR027417 -
Cca03g02394 1343 Gene3D ABC transporter type 1, transmembrane domain 145 1050 IPR036640 GO:0005524|GO:0016021
Cca03g02394 1343 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 413 661 IPR027417 -
Cca03g02394 1343 CDD ABC_6TM_Pgp_ABCB1_D1_like 98 395 - -
Cca03g02394 1343 MobiDBLite consensus disorder prediction 1324 1343 - -
Cca03g02394 1343 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1077 1313 IPR003439 GO:0005524
Cca03g02394 1343 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 98 1320 IPR039421 -
Cca03g02394 1343 CDD ABC_6TM_Pgp_ABCB1_D2_like 743 1059 - -
Cca03g02394 1343 ProSitePatterns ABC transporters family signature. 561 575 IPR017871 GO:0005524
Cca03g02394 1343 SMART AAA_5 1104 1296 IPR003593 -
Cca03g02394 1343 SMART AAA_5 449 635 IPR003593 -
Cca03g02394 1343 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1068 1316 IPR027417 -
Cca03g02394 1343 SUPERFAMILY ABC transporter transmembrane region 741 1061 IPR036640 GO:0005524|GO:0016021
Cca03g02394 1343 CDD ABC_MTABC3_MDL1_MDL2 1077 1316 - -
Cca03g02394 1343 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 100 387 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca03g02394 1343 CDD ABC_MTABC3_MDL1_MDL2 422 661 - -
Cca03g02394 1343 MobiDBLite consensus disorder prediction 24 54 - -
Cca03g02394 1343 Pfam ABC transporter 440 589 IPR003439 GO:0005524
Cca03g02394 1343 Pfam ABC transporter 1096 1244 IPR003439 GO:0005524
Cca03g02394 1343 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 754 1041 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02394 Cca-Chr3 45008084 45015144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02394 64 1338 Calmodulin-binding Proteins AT2G36910 88.941 0.0 2334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02394 03 45008084 45015144 Cca03g02394 03 45008084 45015144 ECH