Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02389 ATGCTTAAGTCTTGTGTTCAGAACTTGCAAAAGAGTTTCTCACTCTTTGTTCACTTCAACAAGGATCAAGTGGAAGAAGCAACTTTGGTGCCAGACGATGTTATGGAGGGACATTTTGTTGTTCTTGCCATGAAGGGTGAAGAAACCAGAAGGTTTGTTGTTAAGTTAGACTATTTGACTGATCCTATGTTCATGGATTTACTGAACCAAGCTCGAGAGGAGTATGGTTTCAGGCAAAAAGGAGCACTTGCTGTCCCTTGCAGGCCCCAAGAATTACAAAACATTCTAGATGTTCCAAGAGCCAAAGCTCCAAGGTTATTTGTGGATGCGAGCAATATGTTTTACATTCCAAACGTGTCAAGGTCTCTCAGCAGAAGTCATATTCTTGATGGCATTGTGAGCTTCATAAACATCAGACTTCATATTAAAGGGATCCTCTGTTTGTTGAAACGACAATAA 459 0.4052 MLKSCVQNLQKSFSLFVHFNKDQVEEATLVPDDVMEGHFVVLAMKGEETRRFVVKLDYLTDPMFMDLLNQAREEYGFRQKGALAVPCRPQELQNILDVPRAKAPRLFVDASNMFYIPNVSRSLSRSHILDGIVSFINIRLHIKGILCLLKRQ 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02389 152 Pfam Auxin responsive protein 28 97 IPR003676 GO:0009733
Cca03g02389 152 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 1 102 IPR003676 GO:0009733
Cca03g02389 152 PANTHER F8A24.8 PROTEIN 1 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02389 Cca-Chr3 44952504 44953665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02389 32 98 Calmodulin-binding Proteins AT4G34750 41.791 1.63e-11 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02389 - K14488 gmx:100794061 229.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02389 03 44952504 44953665 Cca02g00426 02 8932823 8933331 PCT