Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02384 ATGAAGTGTTTTCCATTCTCCTATGGAGAGAAGAAAGATGAGCCAAAAGGCTTGCAGTCGACATCGGGTCGGTCAGACAATTCCACATGTGTGGAGGCTGAGGTTAGAAGATCTGGTTCTGAGTTAAATTCACAGGATGTTTCAGACAATGGCAACACAGAATCCCTCAGGAGGAATGCAATTCCCAGTTTGTCCCAGAGGCCCAGCAACCTTAGAGTGTTTACTGTATCTGAACTGAGATCAGCCACAAAGAATTTCAATCGCTCTGTTATGATTGGAGAGGGCGGGTTTGGGTGTGTCTACCTGGGGCTGATTAGAAGTGCGGAGGACACATCCAGAAGAATTGAAGTTGCAGTTAAACAGCTTAGTAAAAGAGGAATGCAGGGGCATAGGGAATGGGTGACAGAAGTTAATGTTCTGGGCATTGTTGAGCATCCAAATCTTGTGAAACTAGTGGGTTACTGTGCTGATGATGATGAAAGAGGAATCCAACGGCTTCTGATTTATGAATACATGCCAAACAGAAGTGTGGAACACCATTTATCTCATCGGTCAGAGACTCCTCTTCCATGGAGTAGGAGATTGAAAATAGCTCGAGATGCAGCTCGTGGGTTAACATATCTGCATGAGGAAATGGATTTTCAGATAATTTTTAGAGATTTCAAATCTTCAAATATCCTTTTGGATGAACAATGGAATGCAAAGCTATCAGACTTTGGGTTAGCAAGGTTGGGACCATCAGACGGACTGACTCATGTCTCAACAGCGGTTGTAGGAACAATGGGATATGCAGCTCCTGAATATGTTCAAACTGGACGTCTAACATCAAAGAATGATGTATGGAGCTATGGTGTCTTCCTTTATGAACTTATTACTGGTAGACGCCCTTTAGATCGAAATCGCCCCAGGGGTGAGCAGAAGCTGTTGGAATGGATAAGGCCATACCTATCAGATGGGAAGAAATTTCAACTAATATTAGATCCAAGACTTGATAAGAAACAAGTCTTCAAGTCGGCCCAGAAACTTGCTATGATAGCTAACCGATGCTTGGTAAAAAATCCTAAGAATAGACCAAAGATGAGTGAGGTGTTGGAAATGGTGAATGGAATGCTAGAATCTTCTTCATCCAGTTCCAGTCCACAGTTGCCTTTGCGGAGTGTGGCAACAGTGAAAGCTTCTCAGGATACAGAAATAAATAACAAGAAACGGACCATGGATCAGAAACCTGGAGAAAGTAATTGGTTTGTTAGGATGTGGAGACCAAAGCTTGTAAGAACATGCTGA 1284 0.4291 MKCFPFSYGEKKDEPKGLQSTSGRSDNSTCVEAEVRRSGSELNSQDVSDNGNTESLRRNAIPSLSQRPSNLRVFTVSELRSATKNFNRSVMIGEGGFGCVYLGLIRSAEDTSRRIEVAVKQLSKRGMQGHREWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLIYEYMPNRSVEHHLSHRSETPLPWSRRLKIARDAARGLTYLHEEMDFQIIFRDFKSSNILLDEQWNAKLSDFGLARLGPSDGLTHVSTAVVGTMGYAAPEYVQTGRLTSKNDVWSYGVFLYELITGRRPLDRNRPRGEQKLLEWIRPYLSDGKKFQLILDPRLDKKQVFKSAQKLAMIANRCLVKNPKNRPKMSEVLEMVNGMLESSSSSSSPQLPLRSVATVKASQDTEINNKKRTMDQKPGESNWFVRMWRPKLVRTC 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02384 427 ProSiteProfiles Protein kinase domain profile. 86 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02384 427 SUPERFAMILY Protein kinase-like (PK-like) 63 367 IPR011009 -
Cca03g02384 427 Coils Coil 105 125 - -
Cca03g02384 427 MobiDBLite consensus disorder prediction 1 55 - -
Cca03g02384 427 ProSitePatterns Protein kinases ATP-binding region signature. 92 120 IPR017441 GO:0005524
Cca03g02384 427 Gene3D Transferase(Phosphotransferase) domain 1 172 390 - -
Cca03g02384 427 CDD STKc_IRAK 92 370 - -
Cca03g02384 427 Pfam Protein tyrosine and serine/threonine kinase 91 365 IPR001245 GO:0004672|GO:0006468
Cca03g02384 427 PANTHER KINASE 1B 12 422 - -
Cca03g02384 427 MobiDBLite consensus disorder prediction 20 55 - -
Cca03g02384 427 PANTHER OS01G0588500 PROTEIN-RELATED 12 422 - -
Cca03g02384 427 Gene3D Phosphorylase Kinase; domain 1 66 171 - -
Cca03g02384 427 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02384 Cca-Chr3 44891970 44898149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02384 1 378 Glycoside Hydrolase AT3G07070 41.495 3.03e-90 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Cca03g02384 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02384 - - gsj:114400704 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02384 03 44891970 44898149 Cca03g02384 03 44891970 44898149 ECH
Cca03g02384 03 44891970 44898149 Cca02g00440 02 9271821 9276395 PCT