Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02378 ATGAATGCCGAGACTCTTGCTATGAACAAAGATGGAGGGGATGTCCGTTCTAGGTGCAACAAGGGATTGGCTAAAGCACATAAACATAAGACACTAGCAAATCTTCATATGAAAGATAAAAAAGGCAGCAAGGAAGTTGTGTGTTCCAATTGCGTGCGTGGTGGAGCAATTTTATGTTGCTGTGGAAAAGGATGTCAAAGGAGGTACCATCCCTCTTGTGTGAATCTTCCTTTCAATTACATTCCTTTGGGGTTTTGGCATTGTATCCGGTGCATTAAGAAAAAGATTGAGCTTGGTGTGCATTCTGTTTCTGAAGGAGTGTCAACCATCTTGGATTTTACAGAAGAGGGCTCAAACAATAATGTGATGCAAAGGAAGTACCTTGTCAAGTATCATGGCCTCGCTCATGCTCACAACCTCTGGATTCTAGAATCAGAATTGCTTCTTGAGGCTCCTAAGCTCTTGGCCAAATTTAAGAGGAAACTGCAGATTCCAAATTTCCAGGTTAGGTGGAAAAAAGATTGGAAAATACCTCACCGCTTGCTGCTAAAAAGGGAAATTGTATTATCAAAACAAAATGATCAACATTTTGATGGGCATGGTGACAATGGTTCAATTTGCCGATATGAGTGGCTTGTCAAATGGACTGGTCTTGGTTATGATAATGTTACATGGGAGCTAGATGATGCTTCATTCTTGACATCACCTGAAGGCATGAAACTCATATATGATTATGAAAGTTGTCGCCAGAGAGCAGATAGACTGCCAAAAAATCATTTTGAAgctaacaagGAGAGAAAAGCTTCCTTTGCTGAATTATCAGAGTTGCCATATGGAGAATCACCAGGATTTTATAACCAGCATTTGAGTTATGTGAACAAGCTTCGCATGTGTTGGCATGAAGGTCAGAGTGCTGTTATTGCAGATGATCAAATTGACCAGGAGCGGGTTATGAAGGTGATTTTGTTTATATTATCTTTGAATTGTAATGTGAAGAGGCCTTTTCTCATCATCTCAACTTCTACTGCCCTCTCTGTATGGGAAACAGAGTTCTTAAATTTGGCACCATCTACCAATATGGTTGTTTACAAGGGAAACAGAGGTGTACGGAGTGGCATCAGGGCATTAGAGTTTTTGAATGAATATGATGACATCTTATTTCAAATATTATTATCATCTTCTGATGTTATTGTTGAGGACTTACATGCATTAAGATGCATTCCATGGGAAGCAATAATAATTGATGAATGCCAGCGATCCAGAATTTTAGGACACTTGGGCAATATCAATATTCTAAAAGCTGAAATGAGGCTCCTTCTTGTTAGTGGGCAAATCAAGGAAGATCGAGCTGATTATATCAAACTACTTTCGTTCCTCCATGGGTCAAATATTGCTCAAATGGAAGCTTATATTTCTGGTAGCATTTCCACTTTGAAGAGCCAACTGGAAAAATATGTTGTATTTAAGTGCAAGTCAGACTCCACTAAGTTTGTAGAGTATTGGGTTCCTGCCTGCCTTTCCAGTTTGCAGCTTGAGCAGTATTGTTCAATGCTACTTTCAAACTTAATGTTGTTATGCTCAGGCCAAAAGTCTGACTCCGTTGATGCCCTCCATAACCTTATTATCTCAACAAGGAAGTGCTGTGACCATCCTTATCTCCTGGATCCAACACTGCATAGTTTTGTTACTAAAGGTCTACCTGTTGAAAAGCATTTAAATATTGATATAAAAGCAAGTGGAAAACTGCAACTTCTGGAAAAAATCCTTTTGGAGGCAAGAAGTCGTCAGTTAAGGGTGTTAATATTATTTCAGTCAACTTGTGGTTCTGGATCAATTGGAGATATTTTGGATGATGTTCTCTGTCAGAGATTTGGTAAAGATTGCTATGTACGATATGATAGAAGTTATGCCCCCAAAACAAAGCAAGCTGCTTTAGACACATTTAATGACAAAGAAATTGGAAAATTTGTCTTCTTGATGGAAAATCGTGCTTGTCTCTCTAGCGTTAAGCTTTCTTCCGTGGATACAGTTATATTGTTTGACAGTGATTTGGACCCACAAAATGATCTAAGAGGCTTACAAAGGATGTCTATTAGCTCACAGTTCAAACAGTTTTCAGTTTTCAGATTGTACTCATATTTCACTGTTGAAGAAAAGGTTTTAATGCTTGCAAAAGAGGGTATAGCTCTTGACAGCAATGTACGGTTGATGAGCCTGAATACTTGTCACACCCTGCTAAATTGGGGTAACTCCTATCTGTTCAATAAGCTTGATGAGTTACATGCCAGTGTCACGTCAGTTTCTACTCCAGACATTGCTGATCTGTCACTTCTAAGTGATGTATTTTGTGAATTATCATCCCAATTGGTTTGTGGTGCTGATGATACTGATTGTCATGGATTGTCATTCATAACAATAATACAGCAGAATGAAGGGGAATATGCGAGGAACAGTTTATTGCTAGGAGAAAGAATAATGAAGAAATTGGGCAGTAAGCCATCTGCTTTTTCCTGGAGTGATCTTGAAGGAAGGCATCCTCCATGGAAATTTTTGTCTGTTTCATCTCAGAGGATCAGGAAAACAGTAAGACAGTTTGATCACATACTAACAGAATCTGAATTTGAAAATGATACCTTTATAGGAAAGAGGACAACATCAAAGGATAATGTTGATCCCAAGAGGAGAAAAGTGTCCAAGGATAATGTTGATCCTATGTGGAGGAGATTGACCAAGGATAAAGTTGACCCCATGAGGAGGAAAGTGTCCAAGGATTTTGTTGAAACAAATGGGAGGAAAGTGTTAAATCATGCCATTGATCCTAAGACCTGGGAGGTGTCTGCTGATATTGTTGATTCAAAGGGCAGGAAAGTGTCCAAGAATATTGCTGATGCCAAATGTCAGAAAACAAGGTTAAAGAGCAAGAAGAATCCCAGTGTTGTCATTAGAGCAAGTAAATCAAATGGTAATTCAAAAGGCTTGTCTAATGCACTTGATTCCACAGTGCATCCTTTGACCAATGAGACAGCACAAGCAACTGCAACAAGCATGCAATTTACAGAGAAAAAGAAACTGCTTGACATACCAAATAGCATCAATTGCTTGCCAAAGCCTAATATATCAGGACTTTGTGACATTCTACATTTTTCGAAAAATGTCAAGGCTGTGGCGGAGAGGATTGTTGAGCACATATTCAAACATTACAATGTTAATTGCCAAGAAGTTTCTACTGTACAGGCTTTTGAAATATCTGTGTGTTGGCTAGCAGCTTCTTTGTTGAAACACAAGATTGATAGGAAGGATTCACTCGCCCTTGCAAAACTGTACTTGAATTTCAATTGTAAGGAAGAGGAAGCCACAGATGTTTACTCAGAACTGTGGAAGCACGTGAAGGAATTTTCAAATTATTTACAAAATGGAATTTGTGTTGAGAAATGTGATGTAAATGGTGCTTCAGATTCCAACAAACCTGAGCTGAATGATTTGGCAGAGAAGCAGAAGGATTTTCTGGGTACTTGTGCTTCAAAACTTGTGAAATCTGTCACAAACGAACATGATCTTCAAATGAAAACTCCCCCAACAGGGGTTTCCCAAGACCAGACTAATGAAGTTTGTTTATCTCCAAAGACACCCAGTAGTTTTCCTGTGGAAGCAGATGCTATCTCCATGGAATCTTGCTCAGAAGATGATGGAATGAATTCTATGACCTTAATAAGAGCAGAATATTCATCCATTGAGCACTGGAGTAATGATGTCAACCCTGTTACAGGTTCTTTGGAAATAAAGAGTCCTGTTAGAAGTACAGATATTACACAATCTGATGGCATAGTTTCTGAAGATCCTCATTTTTTAGTGAATGAAGATGTTGCTACTGACAATGCTATGAATACGTTTACTCATCCTGTGCAGCTTGACAGTGTTGAGATAGATGCTGTAACTTGCGTTAGTGCTGCTGTTCCCGAGGGCAGACAATCATACAGTGTAATGGGTCCTGTAAGTGGTGAGTCAACTGCTCAGATGGCAATGTCTGCTATTCCATCTTCTCCGGAGCACAATGCAGTCAGTACAGACAGGCCTTTAGATGATATTTTTTATCTTAGTAGTGAGGATAATTGCTACATTCATGAGGCTGAAGTCATATTGGAAGAACCAGTTAACTCTTTCTTTGTTTCACCAGTGATACTGCAACCCTTCAATGGTGTGCTCATGAATGAAAATACGACACATGTACCTGGCAGAATTAATATTCCTGGATATATGAACAGTGACAATTCTCAAGCTTACTCTGTCACTCCTGAAATGTCCCACCTTGCCTACCCAGACCCACTACCGGGTGAAATGGAGAGAACAGAAAACGGGAATGAAGAAGCCTTCACAGACCCGCTGCTAATTGAAATGGAGAGAATAGAAAAGGTGAATGAAGAAGCCTCCAAGATACATGAGCAAAAGTTATTGCAGCTCCAATCTGACTATAAAAAGGAGTTTGAAAAGTTGAGTGAAAAGTACAAGATTTTGCTTGAGAATGTCAATACTGAAGCAACACTAAAAGGAATGGAACTTGAGAAACAATGTAAATTAGTTTTGAGGAATAAGGTATTAGCTGAAGTTTGGATTCATAGCGAAAGAGATGTGGCACAATGGACAGACCAAGTCTTCCTCTCTGCAACGGCAATGCCTGGTTCTCATTTGACCGCACAAGATAAAGTCAACCATTCCAGAAATCAACAGTGTTAG 4731 0.3912 MNAETLAMNKDGGDVRSRCNKGLAKAHKHKTLANLHMKDKKGSKEVVCSNCVRGGAILCCCGKGCQRRYHPSCVNLPFNYIPLGFWHCIRCIKKKIELGVHSVSEGVSTILDFTEEGSNNNVMQRKYLVKYHGLAHAHNLWILESELLLEAPKLLAKFKRKLQIPNFQVRWKKDWKIPHRLLLKREIVLSKQNDQHFDGHGDNGSICRYEWLVKWTGLGYDNVTWELDDASFLTSPEGMKLIYDYESCRQRADRLPKNHFEANKERKASFAELSELPYGESPGFYNQHLSYVNKLRMCWHEGQSAVIADDQIDQERVMKVILFILSLNCNVKRPFLIISTSTALSVWETEFLNLAPSTNMVVYKGNRGVRSGIRALEFLNEYDDILFQILLSSSDVIVEDLHALRCIPWEAIIIDECQRSRILGHLGNINILKAEMRLLLVSGQIKEDRADYIKLLSFLHGSNIAQMEAYISGSISTLKSQLEKYVVFKCKSDSTKFVEYWVPACLSSLQLEQYCSMLLSNLMLLCSGQKSDSVDALHNLIISTRKCCDHPYLLDPTLHSFVTKGLPVEKHLNIDIKASGKLQLLEKILLEARSRQLRVLILFQSTCGSGSIGDILDDVLCQRFGKDCYVRYDRSYAPKTKQAALDTFNDKEIGKFVFLMENRACLSSVKLSSVDTVILFDSDLDPQNDLRGLQRMSISSQFKQFSVFRLYSYFTVEEKVLMLAKEGIALDSNVRLMSLNTCHTLLNWGNSYLFNKLDELHASVTSVSTPDIADLSLLSDVFCELSSQLVCGADDTDCHGLSFITIIQQNEGEYARNSLLLGERIMKKLGSKPSAFSWSDLEGRHPPWKFLSVSSQRIRKTVRQFDHILTESEFENDTFIGKRTTSKDNVDPKRRKVSKDNVDPMWRRLTKDKVDPMRRKVSKDFVETNGRKVLNHAIDPKTWEVSADIVDSKGRKVSKNIADAKCQKTRLKSKKNPSVVIRASKSNGNSKGLSNALDSTVHPLTNETAQATATSMQFTEKKKLLDIPNSINCLPKPNISGLCDILHFSKNVKAVAERIVEHIFKHYNVNCQEVSTVQAFEISVCWLAASLLKHKIDRKDSLALAKLYLNFNCKEEEATDVYSELWKHVKEFSNYLQNGICVEKCDVNGASDSNKPELNDLAEKQKDFLGTCASKLVKSVTNEHDLQMKTPPTGVSQDQTNEVCLSPKTPSSFPVEADAISMESCSEDDGMNSMTLIRAEYSSIEHWSNDVNPVTGSLEIKSPVRSTDITQSDGIVSEDPHFLVNEDVATDNAMNTFTHPVQLDSVEIDAVTCVSAAVPEGRQSYSVMGPVSGESTAQMAMSAIPSSPEHNAVSTDRPLDDIFYLSSEDNCYIHEAEVILEEPVNSFFVSPVILQPFNGVLMNENTTHVPGRINIPGYMNSDNSQAYSVTPEMSHLAYPDPLPGEMERTENGNEEAFTDPLLIEMERIEKVNEEASKIHEQKLLQLQSDYKKEFEKLSEKYKILLENVNTEATLKGMELEKQCKLVLRNKVLAEVWIHSERDVAQWTDQVFLSATAMPGSHLTAQDKVNHSRNQQC 1576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02378 1576 Gene3D - 166 247 - -
Cca03g02378 1576 Gene3D - 1457 1538 - -
Cca03g02378 1576 CDD SF2_C_SNF 574 696 - -
Cca03g02378 1576 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 1195 1557 - -
Cca03g02378 1576 Coils Coil 1487 1511 - -
Cca03g02378 1576 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 18 1144 - -
Cca03g02378 1576 SUPERFAMILY FYVE/PHD zinc finger 34 95 IPR011011 -
Cca03g02378 1576 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 469 IPR027417 -
Cca03g02378 1576 Gene3D - 102 165 - -
Cca03g02378 1576 Gene3D - 287 497 IPR038718 -
Cca03g02378 1576 ProSitePatterns Zinc finger PHD-type signature. 48 91 IPR019786 -
Cca03g02378 1576 SMART chromo_7 174 250 IPR000953 -
Cca03g02378 1576 SMART chromo_7 104 163 IPR000953 -
Cca03g02378 1576 SUPERFAMILY Chromo domain-like 172 232 IPR016197 -
Cca03g02378 1576 SMART PHD_3 47 92 IPR001965 -
Cca03g02378 1576 SUPERFAMILY Chromo domain-like 64 167 IPR016197 -
Cca03g02378 1576 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 497 759 IPR027417 -
Cca03g02378 1576 Pfam SNF2-related domain 318 553 IPR000330 GO:0005524|GO:0140658
Cca03g02378 1576 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 101 IPR013083 -
Cca03g02378 1576 ProSiteProfiles Chromo and chromo shadow domain profile. 183 257 IPR000953 -
Cca03g02378 1576 PANTHER HELICASE PROTEIN MOM1-LIKE ISOFORM X1 18 1144 - -
Cca03g02378 1576 Gene3D - 498 731 IPR027417 -
Cca03g02378 1576 ProSiteProfiles Zinc finger PHD-type profile. 45 94 IPR019787 -
Cca03g02378 1576 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1195 1557 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02378 Cca-Chr3 44832421 44851412 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca03g02378 SNF2_N 5e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02378 - K11643 gmx:100813574 2087.38