Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02377 ATGGAACCCACCAACAATGCTTCCTTTTGCCTCCACACTGACGCTGACCCCCTCAATTGGGGCCTTGCGGCCGAGGCCATGAAGGGGAGCCACCTCCACGAGGTCAAGCGCATGCTCGCCGACTACCGGAACCCGCTGGTGCGCCTCGGCGGGGAGACCCTCACCATCGCTCAGGTGGCGGCGGTGGCTGCACACGACAGCGGAGTGGCGGTGGAGCTGTCGGAGTCCGCGAGGGAGGGCGTTAAGGCGAGCAGCCAGTGGGTGATGAACAGCATGAACAACGGGACCGACAGTTACGGCGTCACAACTGGGTTTGGTGCCACGTCACACCGCCGAACCAAACAAGGTGGTGCTTTGCAGAAGGAACTCATCAGGTTTTTGAACGCTGGAATATTTGGAAATGGAACTGAATCAAGCCACACGTTGCCACACACTGCAACCAGAGCAGCCATGTTAGTGAGAATCAACACTCTTCTTCAGGGGTACTCAGGCATTAGATTCGAAATCTTAGAAGCCATCACGAAGCTCCTTAACAACAACGTTACCCCATGTTTGCCTCTTCGTGGCACAATCACGGCTTCTGGAGATCTTGTTCCACTATCTTACATTGCTGGCTTGCTAACTGGCCGACCTAACTCCAAAGCTGTTGGACCTTCTGGAGAAGTACTCAACGCTAAGGAGGCTTTTCAATTGGCTAACATCAATTCTGACTTCTTTGAGTTGCAACCCAAGGAAGGCCTTGCCCTTGTGAATGGCACAGCTGTGGGTTCTGGCTTAGCTTCCATGGTTCTCTTTGAGGCAAATATACTAGCTGTCTTGTCTGAAGTTCTATCAGCTATTTTTGCTGAAGTGATGCAAGGGAAACCTGAATTCACTGACCATTTGACACACAAGTTAAAGCACCACCCTGGTCAAATTGAGGCTGCTGCTATTATGGAGCACATTTTGGATGGAAGTTCCTACATGAAAGCTGCTAAGAAGTTGCATGAGATAGACCCCTTGCAAAAGCCAAAGCAAGATAGATATGCCCTTAGAACTTCTCCACAGTGGCTCGGCCCTCTCATTGAAGTGATTCGTTTCTCAACCAAGTCAATTGAGAGAGAGATTAACTCTGTGAACGACAACCCTCTGATTGATGTTTCAAGGAACAAGGCATTGCATGGTGGTAATTTCCAAGGAACCCCTATTGGAGTCTCTATGGACAACACGCGTTTGGCTCTTGCATCTATTGGCAAACTCATGTTTGCTCAATTCTCTGAGCTTGTCAATGATTTTTACAACAATGGGTTGCCTTCAAATCTCACCGCTAGTAGAAATCCTAGCTTGGATTACGGTTTCAAGGGAGCTGAAATTGCCATGGCTTCTTACTGCTCTGAACTCCAATATCTTGCAAATCCAGTAACAAGCCATGTCCAAAGTGCCGAGCAACACAACCAAGATGTGAACTCTTTGGGTTTGATTTCATCTAGGAAGACAAATGAATCTATCGAGATCCTTAAGCTCATGTCTTCCACATTCTTGATTGCCCTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAAAACTCGGTCAAGAGCACTGTGAGCCTAGTTTCCAAGAGGACTCTCACCACAGGTGTGAATGGAGAACTCCATCCTTCAAGATTTTGTGAGAAAGATTTGCTAAAAGTGGTTGATAGGGAGTATGTATTTTCCTATATTGATGATCCCTGCAGTGCTACTTATCCATTGATGCAAAAACTGAGGCAAGTGCTTGTAGATCATGCATTGGTAAATGCAGAGAATGAGAAGGATGCGAACACATCAATCTTTCAAAAGATTTCAACCTTTGAGGAGGAGTTGAAGGCTCTCTTGCCAAAGGAGGTTGAAAGTGCAAGAGCTGCTTATGAGAGTGGAAAGGCTGCAATTCCAAACAAGATCAAAGAATGCAGATCTTACCCACTGTACAAGTTTGTGAGAGAGGAGTTAGGAACTGGGTTGCTAACTGGAGAAAAGGTGAGGTCACCAGGTGAAGAGTGTGACAAATTATTCACAGCAATGTGCCAGGGTAAAATTATTGATCCTCTTCTGGAATGCCTCGGGGAATGGAATGGAGCTCCTCTTCCAATCTGTTAA 2124 0.4703 MEPTNNASFCLHTDADPLNWGLAAEAMKGSHLHEVKRMLADYRNPLVRLGGETLTIAQVAAVAAHDSGVAVELSESAREGVKASSQWVMNSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNVTPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGEVLNAKEAFQLANINSDFFELQPKEGLALVNGTAVGSGLASMVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLTASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNESIEILKLMSSTFLIALCQAIDLRHLEENLKNSVKSTVSLVSKRTLTTGVNGELHPSRFCEKDLLKVVDREYVFSYIDDPCSATYPLMQKLRQVLVDHALVNAENEKDANTSIFQKISTFEEELKALLPKEVESARAAYESGKAAIPNKIKECRSYPLYKFVREELGTGLLTGEKVRSPGEECDKLFTAMCQGKIIDPLLECLGEWNGAPLPIC 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02377 707 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 189 205 IPR022313 GO:0016841
Cca03g02377 707 Gene3D - 7 253 IPR024083 -
Cca03g02377 707 CDD PAL-HAL 52 517 IPR001106 -
Cca03g02377 707 PANTHER HISTIDINE AMMONIA-LYASE 12 707 IPR001106 -
Cca03g02377 707 SUPERFAMILY L-aspartase-like 16 707 IPR008948 GO:0003824
Cca03g02377 707 Gene3D Fumarase/aspartase (Central domain) 254 702 - -
Cca03g02377 707 Pfam Aromatic amino acid lyase 54 526 IPR001106 -
Cca03g02377 707 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 16 696 IPR005922 GO:0005737|GO:0006559|GO:0016841
Cca03g02377 707 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 12 707 - -
Cca03g02377 707 Gene3D - 520 641 IPR023144 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02377 Cca-Chr3 44822877 44826162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02377 16 707 Monolignol Biosynthesis Gene Families AT2G37040 83.815 0.0 1238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02377 K10775 - gmx:100811101 1324.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02377 03 44822877 44826162 Cca02g02017 02 40029222 40035096 ECH
Cca03g02377 03 44822877 44826162 Cca03g02377 03 44822877 44826162 ECH