Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02374 ATGCTGGAGTCAAAGGAGAAACTGAAAGAGGTGGACATGTGTTTGGATCATGAGCTATGGCACGCGTGTGCGGGAGGGATGGTGCAAATGCCAGTGGTGAATGCTAAGGTGTTCTATTTCCCTCAGGGGCATGCCGAACATGCATGTGGACCCGTGGACTTCAGGGCTTACCCCAAAATTCCACCTTTCATTCAATGCCGAGTGGGAGCTATCAAATACATGGCTGATCCTGAGACAGATGAGGTGTATGCCAAAATGAGGCTTGTTCCTTTGAGCAGCAAGgaggttgattttgatgatgatggtggtgttgGAGGAGGAATCAATGGATCTCAAACCAAGGATAGGGATAAACCTCCTTCTTTTGCCAAAACCTTGACTCAATCTGATGCCAACAATGGTGGGGGATTTTCCGTTCCAAGATATTGTGCTGAGACAATTTTCCCTCGATTGGACTATTCTGCGGAGCCTCCTTATCAGAACATTTTTGCCAGGGATGTTCATGGAGAAACGTGGAAATTCAGGCACATTTATCGAGGCACGCCAAGGCGGCATTTGTTGACCACAGGGTGGAGTACTTTTGTGAATCAGAAGAAGCTTGTGGCAGGGGATTCAATTGTCTTTTTGAGGGCTGAAAATGGTGATCTGTGTGTGGGAATTAGAAGAGCCAAGAGGGGGATTGGTGGAGGATTTGAGACTCCATCAGTGTGGAATTCAGCTAGGGGGATTCGTCCTATGCCTTTTGGAGGGTTTTCTGCTTTTTTGAGAGAGGAAGATAACCAACTCATGAGAAATGGTAATAGTAATGGAAATGGGTTGAGTTTGAGTCCAGGGGCAAAGGGGAAAGTGAGGCCTGAAGCAGTTATTGAGGCTGCTACTCTTGCTGCCAATTTGCAAGATTTTGAGGTTGTTTACTACCCTCGGGCAAGTACTCCTGAGTTTTGTGTGAAGGCGTCTTTGGTTAGAGCGGCATTTCAGATTAGGTGGTGTCCTGGAATGAGGTTTAAAATGCCCTTTGAAACGGAGGACTCCTCGCGGATAAGTTGGTTTTTGGGAACCATATCTTCTGTTAACTTTGCTGATCCAAGATGGCCAGACTCTCCTTGGAGACTTCTCCAGGTTACATGGGATGAGCCAGAGTTGCTTCAAAATGTGAAAAGGGTGAGCCCGTGGCTGGTTGAAATAGTATCAAACATGCCTGCCATCCATCTTTCCCCTTTCTCACCACCAAGGAAGAAGCTGAGATTGCCTCAACACCCAGAGTTTGCCTTTGAAGGCCAGATTCCATTTCCAACATTTCCCAGCAACTTTCTAGGTCCCACCAATCCCTTTGGTTATCCACCTGAAAGTACTACTCCTGCTGGCATGCAGGGAGCCAGGCATGATAACTATGGTATATCCTTACCAAATTTCCACCTCAATAATAAACTGCACTCAGGTCTATTTCAATCTGGTTTCCCACCACTTGATCACGCTGCTTCACCAACATTGAGGGTCTCCAACACCCCACCATTGCAAAAGGCCAACACAAGTGACAACGTCTCTTGCCTATTATCTATGTCAACTTCTTCTCAATCTTCAAAGAAAGTAAATGATGTGAAGGCACCCCACTTGGTTCTTTTTGGCCAAACAATTCTCACTGAGCAGCAAATCTCTCTGAGCACCTCTGCTGACACAGTTTCCCCAGGAAAAAGCTCGCCTGATGGAAATGTTGATAAAATGACCAATTTTTCAGATGGTTCCGGTTTTGATCTTCACAAACAACGCTCCTCTTGTGAGGTGTTCCATTGGTACAAGGATCACCACCACAAAGAAACCGTAGCTAGTTTGGAGACAGGTCACTGTAAAGTTTTTATGGAATCAGAAGATGTTGGTCGGACTATGGACCTCTCATTGCTTGGGTCTTATGATGAATTGTATAGAAAAATGGCTGATATGTTTGGCATAGAAAAATCTGTGGTGCTAAGTCATGTGCTTTACTGTGATATAACTGGGGCAGTCAAGCATATTGGAGATGAGGCATTCAGTGACTTCACCAAATCCGCTAGGAGGTTGACAATTATAATGGATTCCAGCAGAGACAATAGAGGAATATAG 2097 0.4478 MLESKEKLKEVDMCLDHELWHACAGGMVQMPVVNAKVFYFPQGHAEHACGPVDFRAYPKIPPFIQCRVGAIKYMADPETDEVYAKMRLVPLSSKEVDFDDDGGVGGGINGSQTKDRDKPPSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPYQNIFARDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGGGFETPSVWNSARGIRPMPFGGFSAFLREEDNQLMRNGNSNGNGLSLSPGAKGKVRPEAVIEAATLAANLQDFEVVYYPRASTPEFCVKASLVRAAFQIRWCPGMRFKMPFETEDSSRISWFLGTISSVNFADPRWPDSPWRLLQVTWDEPELLQNVKRVSPWLVEIVSNMPAIHLSPFSPPRKKLRLPQHPEFAFEGQIPFPTFPSNFLGPTNPFGYPPESTTPAGMQGARHDNYGISLPNFHLNNKLHSGLFQSGFPPLDHAASPTLRVSNTPPLQKANTSDNVSCLLSMSTSSQSSKKVNDVKAPHLVLFGQTILTEQQISLSTSADTVSPGKSSPDGNVDKMTNFSDGSGFDLHKQRSSCEVFHWYKDHHHKETVASLETGHCKVFMESEDVGRTMDLSLLGSYDELYRKMADMFGIEKSVVLSHVLYCDITGAVKHIGDEAFSDFTKSARRLTIIMDSSRDNRGI 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02374 698 Gene3D - 329 401 - -
Cca03g02374 698 Gene3D - 120 224 IPR015300 -
Cca03g02374 698 MobiDBLite consensus disorder prediction 99 130 - -
Cca03g02374 698 SUPERFAMILY DNA-binding pseudobarrel domain 115 225 IPR015300 -
Cca03g02374 698 ProSiteProfiles PB1 domain profile. 612 695 IPR000270 GO:0005515
Cca03g02374 698 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 4 689 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cca03g02374 698 PANTHER AUXIN RESPONSE FACTOR 4 689 - -
Cca03g02374 698 Gene3D - 609 695 - -
Cca03g02374 698 Pfam Auxin response factor 291 373 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cca03g02374 698 SMART B3_2 122 224 IPR003340 GO:0003677
Cca03g02374 698 Pfam B3 DNA binding domain 122 223 IPR003340 GO:0003677
Cca03g02374 698 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Cca03g02374 698 CDD B3_DNA 120 222 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02374 Cca-Chr3 44732480 44736520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02374 15 690 B3 DNA Binding Superfamily AT4G30080 57.518 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Cca03g02374 B3 3.1e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02374 - - gmx:100791442 1083.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02374 03 44732480 44736520 Cca02g02025 02 40167503 40170847 ECH
Cca03g02374 03 44732480 44736520 Cca03g02374 03 44732480 44736520 ECH
Cca03g02374 03 44732480 44736520 Cca10g00522 10 5513342 5516518 ECH
Cca03g02374 03 44732480 44736520 Cca04g00798 04 7953764 7957517 ECH