Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02372 ATGGCGAAAGACATGGAAGGCGAGGGTCACGTTGGGTTGGCGCACAAGGACTACCAAGATCCACCGCCCGCACCCTTCTTCGACCCCGCCGAGCTCCGCAAGTGGTCCTTCTACAGAGCCCTCATCGCGGAGTTCGTCGCCACCCTCCTCTTCCTCTACATCACCATCCTCACCGTCATCGGCTACAACCACCAGACCGACTCCACCGCCGACCTCTGCAACGGCGTCGGCATCCTCGGCATCGCCTGGGCCTTCGGCGGCATGATCTTCGTCCTCGTCTACTGCACCGCCGGCATTTCAGGAGGTCACATAAACCCGGCGGTGACGTTTGGGTTGTTTCTAGCGAGGAAGGTGTCGCTGGTGAGAGCGGTTGCGTACATGGTGGCTCAGTGCTTGGGGGCCATATCCGGCGTTGGCCTTGTCAAGGGCTTTCAGTCCAGCTACTACAACAGGTACAAAGGTGGCGCCAACACTCTCTCTCATGGCTACAGCAAAGGCACTGGCTTGGGCGCTGAAATCATCGGCACCTTTCTCCTTGTCTACACCGTCTTCTCCGCCACCGATCCCAAGAGAAAAGCCAGAGACTCCCATGTTCCCGTGTTGGCACCCCTTCCAATTGGCTTTGCGGTGTTCATGGTTCACTTGGCCACCATACCCATCACCGGCACTGGCATCAACCCTGCTAGAAGCCTTGGACCTGCTGTCATATACAACAACCAGAAAGCATGGGATGACCAGtggatCTTCTGGGTTGGGCCCTTCATTGGTGCTGCCATTGCTGCGATTTACCACCAGTACGTGTTGAGGGCCCATGCGGTGAAGGCGCTCGGCTCTTTCAGGAGCTCCACAAACCTGTAA 858 0.5758 MAKDMEGEGHVGLAHKDYQDPPPAPFFDPAELRKWSFYRALIAEFVATLLFLYITILTVIGYNHQTDSTADLCNGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVAYMVAQCLGAISGVGLVKGFQSSYYNRYKGGANTLSHGYSKGTGLGAEIIGTFLLVYTVFSATDPKRKARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGPAVIYNNQKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAHAVKALGSFRSSTNL 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02372 285 CDD MIP 39 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca03g02372 285 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Cca03g02372 285 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 282 IPR034294 -
Cca03g02372 285 Pfam Major intrinsic protein 31 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca03g02372 285 Gene3D Glycerol uptake facilitator protein. 24 285 IPR023271 -
Cca03g02372 285 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Cca03g02372 285 TIGRFAM MIP: MIP family channel proteins 43 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca03g02372 285 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca03g02372 285 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca03g02372 285 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca03g02372 285 PRINTS Major intrinsic protein family signature 171 189 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca03g02372 285 PRINTS Major intrinsic protein family signature 207 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca03g02372 285 PRINTS Major intrinsic protein family signature 247 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cca03g02372 285 PANTHER AQUAPORIN PIP2-4-RELATED 1 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02372 Cca-Chr3 44699760 44701228 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02372 1 285 Major Intrinsic Protein MIP AT3G53420 79.791 1.83e-167 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02372 K09872 - gmx:100807883 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02372 03 44699760 44701228 Cca03g02372 03 44699760 44701228 ECH
Cca03g02372 03 44699760 44701228 Cca10g00517 10 5420700 5422776 ECH
Cca03g02372 03 44699760 44701228 Cca04g00788 04 7823730 7826104 ECH