Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02371 ATGAAAGTGATAAAGGCCTCAGGAGGAAGTAGTTTGGCTAAACTGGGCCAACGAAACAAGGGATCCAGTTCAGGACTTCCAAATTTCGGCCTCACCAGGCAGATGCATCATCATGCACACGGAAACGAAATCAGCGAAGCAGTTTTCCACATCTTTGGTCTCTGTCTCCGGTTTTCTCTGAATCCAACGCACACCTCATTGACACGAATGGCGGCATCCAACAGGGGTCAAGGTGGAATTCAACAGTTGCTGGCTGCTGAACAGGAAGCGCAAAGAATTGTCAATGCTGCGAAAAATGAAAAATTGGCTAGACTGAAGCAAGCCAAAGAAGAGGCTGAAAAGGAGATTGCTGAATATAGAGCTCAGTTGGAGTACGAGTTTCAAAAGAAATTGACAGAGAGTAGTGGAGATTCTGGTGCTAATGTCAAGAGACTTGAGCAAGAGACTGAAGCAAAGATCCATCACCTGAAAACTGAGGCTGGGAGGATATCAGGGGATGTTGTCACCATGCTCCTCAAATTCTGGTGCAGATAA 534 0.4607 MKVIKASGGSSLAKLGQRNKGSSSGLPNFGLTRQMHHHAHGNEISEAVFHIFGLCLRFSLNPTHTSLTRMAASNRGQGGIQQLLAAEQEAQRIVNAAKNEKLARLKQAKEEAEKEIAEYRAQLEYEFQKKLTESSGDSGANVKRLEQETEAKIHHLKTEAGRISGDVVTMLLKFWCR 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02371 177 Coils Coil 80 129 - -
Cca03g02371 177 TIGRFAM V_ATP_synt_G: V-type ATPase, G subunit 76 176 IPR005124 GO:0016471|GO:0046961|GO:1902600
Cca03g02371 177 MobiDBLite consensus disorder prediction 12 28 - -
Cca03g02371 177 Pfam Vacuolar (H+)-ATPase G subunit 77 176 IPR005124 GO:0016471|GO:0046961|GO:1902600
Cca03g02371 177 PANTHER V-TYPE PROTON ATPASE SUBUNIT G1 72 173 - -
Cca03g02371 177 Gene3D - 70 177 - -
Cca03g02371 177 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT G 72 173 IPR005124 GO:0016471|GO:0046961|GO:1902600
Cca03g02371 177 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02371 Cca-Chr3 44692529 44696315 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02371 78 173 Primary Pumps ATPases(2) AT4G23710 70.833 8.08e-41 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02371 K02152 - gmx:100305477 157.532
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02371 03 44692529 44696315 Cca03g02371 03 44692529 44696315 ECH