Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02370 ATGAAGATTCCTTGTTCCTTTTGTCCTTGTTTCTCAGCATCCGTCAAAGAACAAACCAAGCACGAAGAGGCAGAGGAAGATAATGATGGAAACTTTCGCGTATTCACCTACAGAGAATTGAATTCTGCCACACGTGGTTTTCATCCCTCGGAAAAGGTTGGAGAAGGAGGCTTTGGCTCTGTCTACAAGGGGCAACTTCGGGATGGAACTTTGGTGGCTGTAAAAGTGCTTTCGATTGAGCTAGATTCCTTGAGAGGAGAGAAGGAGTTTGTGGCAGAATTGACTACCCTAGCAAATATCAAGCACCAAAATCTAGTCATTCTTCGAGGGTGTTGTGTAGAAGGATCCCACAGATACGTAGTATACGATTACATGGAAAACAATAGCCTTCGTTACACTTTCTTAGGTTCAGAGCAAAGTAGGATGAAATTCAGCTGGGAAGTTCGGAGGGATGTGTCCATAGGTGTGGCCAGTGTGCTTGCCTTTCTCCATGAGGAAATTCAACCCCATATTGTGCACAGAgatatcaaatccagcaatgttcttcttgatggaaattttacaccaaaagtctcagattttggattggccaagctACTAAGAGATGAAAAATCCCACATCAGTACCCAAGTTGCAGGCACATTaggttatgttgctccagattatgccagttctggtcacttgacacgaaaaacagatgtttatagttttggagtgctacttttagaaatTGTCAGTGGCCAACCAGTGGTAGATCCGCATCAACACGTGGAACGTTTCATAGTTGAGAGGGTTTGGGCAGCGTATGAGGCTAATGATCTTCTGAGAATGGTGGATCCAGTTTTGAATGCGAACTTCCCCGTGGAAGAAGCGAAAAGGTTCATAATGGTGGGGCTGCGTTGCGTGCAACAAACTGCGAGGCTTCGGCCACGAATGTCAGAAGTTGTAGACATGTTGAGCAACAATATTGACACGAGGGACTTTATTATTTCACAACCAGGATTTGTGAATGATCTCAGAAACGCAAGAATGAGGAGGCAAAAGAATTCATCAGAAGAATCAAGTGTTACTGCAGCAACCTTTGCAGACTCCTCCGGATGGAGTACCACCAATCTTGCCCGTTAA 1125 0.3884 MKIPCSFCPCFSASVKEQTKHEEAEEDNDGNFRVFTYRELNSATRGFHPSEKVGEGGFGSVYKGQLRDGTLVAVKVLSIELDSLRGEKEFVAELTTLANIKHQNLVILRGCCVEGSHRYVVYDYMENNSLRYTFLGSEQSRMKFSWEVRRDVSIGVASVLAFLHEEIQPHIVHRDIKSSNVLLDGNFTPKVSDFGLAKLLRDEKSHISTQVAGTLGYVAPDYASSGHLTRKTDVYSFGVLLLEIVSGQPVVDPHQHVERFIVERVWAAYEANDLLRMVDPVLNANFPVEEAKRFIMVGLRCVQQTARLRPRMSEVVDMLSNNIDTRDFIISQPGFVNDLRNARMRRQKNSSEESSVTAATFADSSGWSTTNLAR 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02370 374 Pfam Protein kinase domain 48 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02370 374 Gene3D Phosphorylase Kinase; domain 1 16 124 - -
Cca03g02370 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Cca03g02370 374 CDD STKc_IRAK 53 319 - -
Cca03g02370 374 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 10 350 - -
Cca03g02370 374 Gene3D Transferase(Phosphotransferase) domain 1 125 330 - -
Cca03g02370 374 ProSiteProfiles Protein kinase domain profile. 47 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02370 374 PANTHER RECEPTOR-LIKE KINASE 10 350 - -
Cca03g02370 374 SMART serkin_6 47 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02370 374 SUPERFAMILY Protein kinase-like (PK-like) 29 340 IPR011009 -
Cca03g02370 374 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02370 Cca-Chr3 44677854 44680205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02370 35 338 Receptor kinase-like Gene Family AT1G56120 48.852 4.99e-92 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca03g02370 Pkinase 7.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02370 - - gmx:100785251 602.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02370 03 44677854 44680205 Cca03g02370 03 44677854 44680205 ECH
Cca03g02370 03 44677854 44680205 Cca02g00838 02 23413945 23416167 PCT