Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca03g02369 | ATGGGCAACATCTCAAGCAGCGGCGCTAACCCCCACCGCCGCCACACCGGAGCTCTAAGGCGGGCCCACCCCCCGCCGCCTCCGCCGGTGACTCCGCAGCCGGAGATCGCCGGGAATCCATTCGTGTACCCTGGTGCCGCACCGTACCCGAACCTTTCCCTGCATTACACGCAGTACCATTACCCCGGTTACTACCCTCCGGTTCCCGTGCCTCATCCTCACCCGCACGTGAACCCCACGTGGCCTCCGGGGCGTTACCCTTGTGGACCGGTGATGCCTGATCCTGCACCCTTCGTTGAGCATCAGAAAGCCGTTACCATAAAGAACGATGTCAATATCAGGAAAGAGTCCCTTAGGCTTGAGCCCGATGAGGCTAACCCTGGTCACTTCCTTCTATCATTTTCCTTTGATGCTACTCTTTCTGGGAGCATCACCATATATTTCTTTGCAAAAGAAGGTGAAGACTGCATCCTCACACCAACAAAGGAAAACCATCTTGCACCAGTGACTGTGCATTTCCAGCAAGGTCTTGGCCAGAAGTTTAGACAGCCAACTGGAACTGGTATTGATTTTTCGGTTTTTGAGGAGTCTGAGTTATTGAAAGTGGGTGACCTGGATGTCTACCCTCTAGCAGTAAAGGCAGATGCATCCCCTGGTAATCATGATGAGTCAGATAGAACTCCAACATCTGGTAACACAAACTCGCAGACTACCCAAGCGGTGTTTGAGAAGGGGAAAGGAGAGTTCCGGGTGAAAGTTGTTAAGCAGGTCTTGTGGGTGAATGGAATAAGGTATGAGCTCCAGGAGATATATGGCATTGGAAATTCAACGGAGAGTGAATTGGATGAGAGTGACCAAGGAAAAGAATGTGTCATCTGCTTGTCAGAGCCCCGTGATACAATTGTCCATCCCTGTCGGCATATGTGTATGTGTAGCGGATGTGCAGAGGTTCTGAGGTTCCAGACAAATAGATGCCCAATTTGCAGACAACCTGTTGAGAGGCTTTTGGAGATAAAGGTAGGGCCTGAGGAGTGA | 1035 | 0.515 | MGNISSSGANPHRRHTGALRRAHPPPPPPVTPQPEIAGNPFVYPGAAPYPNLSLHYTQYHYPGYYPPVPVPHPHPHVNPTWPPGRYPCGPVMPDPAPFVEHQKAVTIKNDVNIRKESLRLEPDEANPGHFLLSFSFDATLSGSITIYFFAKEGEDCILTPTKENHLAPVTVHFQQGLGQKFRQPTGTGIDFSVFEESELLKVGDLDVYPLAVKADASPGNHDESDRTPTSGNTNSQTTQAVFEKGKGEFRVKVVKQVLWVNGIRYELQEIYGIGNSTESELDESDQGKECVICLSEPRDTIVHPCRHMCMCSGCAEVLRFQTNRCPICRQPVERLLEIKVGPEE | 344 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca03g02369 | 344 | ProSiteProfiles | Zinc finger RING-type profile. | 290 | 329 | IPR001841 | - | |
Cca03g02369 | 344 | PANTHER | MAHOGUNIN | 1 | 343 | IPR045194 | GO:0061630 | |
Cca03g02369 | 344 | MobiDBLite | consensus disorder prediction | 21 | 35 | - | - | |
Cca03g02369 | 344 | SUPERFAMILY | RING/U-box | 281 | 334 | - | - | |
Cca03g02369 | 344 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE | 1 | 343 | - | - | |
Cca03g02369 | 344 | CDD | mRING-HC-C3HC5_MGRN1_like---blasttree | 289 | 329 | IPR045195 | - | |
Cca03g02369 | 344 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Cca03g02369 | 344 | MobiDBLite | consensus disorder prediction | 214 | 236 | - | - | |
Cca03g02369 | 344 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 273 | 339 | IPR013083 | - | |
Cca03g02369 | 344 | Pfam | Zinc finger, C3HC4 type (RING finger) | 288 | 334 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca03g02369 | Cca-Chr3 | 44668960 | 44672938 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca03g02369 | 80 | 309 | C3H Transcription Factor Family | AT3G09770 | 62.656 | 1.73e-101 | 301 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca03g02369 | - | - | aprc:113862864 | 563.148 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca03g02369 | 03 | 44668960 | 44672938 | Cca03g02369 | 03 | 44668960 | 44672938 | ECH | |
Cca03g02369 | 03 | 44668960 | 44672938 | Cca02g00839 | 02 | 23437878 | 23442349 | PCT |