Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02369 ATGGGCAACATCTCAAGCAGCGGCGCTAACCCCCACCGCCGCCACACCGGAGCTCTAAGGCGGGCCCACCCCCCGCCGCCTCCGCCGGTGACTCCGCAGCCGGAGATCGCCGGGAATCCATTCGTGTACCCTGGTGCCGCACCGTACCCGAACCTTTCCCTGCATTACACGCAGTACCATTACCCCGGTTACTACCCTCCGGTTCCCGTGCCTCATCCTCACCCGCACGTGAACCCCACGTGGCCTCCGGGGCGTTACCCTTGTGGACCGGTGATGCCTGATCCTGCACCCTTCGTTGAGCATCAGAAAGCCGTTACCATAAAGAACGATGTCAATATCAGGAAAGAGTCCCTTAGGCTTGAGCCCGATGAGGCTAACCCTGGTCACTTCCTTCTATCATTTTCCTTTGATGCTACTCTTTCTGGGAGCATCACCATATATTTCTTTGCAAAAGAAGGTGAAGACTGCATCCTCACACCAACAAAGGAAAACCATCTTGCACCAGTGACTGTGCATTTCCAGCAAGGTCTTGGCCAGAAGTTTAGACAGCCAACTGGAACTGGTATTGATTTTTCGGTTTTTGAGGAGTCTGAGTTATTGAAAGTGGGTGACCTGGATGTCTACCCTCTAGCAGTAAAGGCAGATGCATCCCCTGGTAATCATGATGAGTCAGATAGAACTCCAACATCTGGTAACACAAACTCGCAGACTACCCAAGCGGTGTTTGAGAAGGGGAAAGGAGAGTTCCGGGTGAAAGTTGTTAAGCAGGTCTTGTGGGTGAATGGAATAAGGTATGAGCTCCAGGAGATATATGGCATTGGAAATTCAACGGAGAGTGAATTGGATGAGAGTGACCAAGGAAAAGAATGTGTCATCTGCTTGTCAGAGCCCCGTGATACAATTGTCCATCCCTGTCGGCATATGTGTATGTGTAGCGGATGTGCAGAGGTTCTGAGGTTCCAGACAAATAGATGCCCAATTTGCAGACAACCTGTTGAGAGGCTTTTGGAGATAAAGGTAGGGCCTGAGGAGTGA 1035 0.515 MGNISSSGANPHRRHTGALRRAHPPPPPPVTPQPEIAGNPFVYPGAAPYPNLSLHYTQYHYPGYYPPVPVPHPHPHVNPTWPPGRYPCGPVMPDPAPFVEHQKAVTIKNDVNIRKESLRLEPDEANPGHFLLSFSFDATLSGSITIYFFAKEGEDCILTPTKENHLAPVTVHFQQGLGQKFRQPTGTGIDFSVFEESELLKVGDLDVYPLAVKADASPGNHDESDRTPTSGNTNSQTTQAVFEKGKGEFRVKVVKQVLWVNGIRYELQEIYGIGNSTESELDESDQGKECVICLSEPRDTIVHPCRHMCMCSGCAEVLRFQTNRCPICRQPVERLLEIKVGPEE 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02369 344 ProSiteProfiles Zinc finger RING-type profile. 290 329 IPR001841 -
Cca03g02369 344 PANTHER MAHOGUNIN 1 343 IPR045194 GO:0061630
Cca03g02369 344 MobiDBLite consensus disorder prediction 21 35 - -
Cca03g02369 344 SUPERFAMILY RING/U-box 281 334 - -
Cca03g02369 344 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 343 - -
Cca03g02369 344 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 289 329 IPR045195 -
Cca03g02369 344 MobiDBLite consensus disorder prediction 1 37 - -
Cca03g02369 344 MobiDBLite consensus disorder prediction 214 236 - -
Cca03g02369 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 273 339 IPR013083 -
Cca03g02369 344 Pfam Zinc finger, C3HC4 type (RING finger) 288 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02369 Cca-Chr3 44668960 44672938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02369 80 309 C3H Transcription Factor Family AT3G09770 62.656 1.73e-101 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02369 - - aprc:113862864 563.148
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02369 03 44668960 44672938 Cca03g02369 03 44668960 44672938 ECH
Cca03g02369 03 44668960 44672938 Cca02g00839 02 23437878 23442349 PCT