Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02367 ATGGCAACTCAAGCACATGACTTTCCTAAGATTAATGACCAAAGCACTTCTAGTAGACCTCATAATTTAATTCAAAAGGGTGTATTCGAAATAACAGAGGAACTCCCTAGTAGACATGCACATGGGAGAAGGAAAAACCTTATCTTGGAGATACCCACAAGAACGCTGGATGAAACAAGAGAGGATTTTTTGAGAACAAACCAACCTTTAATTCCATCTCTTAGAAGCCAAACCAATGAATACCTAGGATCCTCGTCAACAAAAAATAAATCAACTAATAAAACCCATATTACCAAGCTCAGTTTTAAACTTCACAACATGAGTTCAGATGTAGAAGAGGCTTCCATCCCAACACTTGAAGGTTCACCCCCAGAGCCACTGCAGAAGCCTGTGATTTCAAGAACACTATCATCTAGTGGGAAGAAAATATCATCCTTACCTGTAACCCCGATTGCTCAGTCTGAACATGGAGGGAACATTGCCTATCCAGCATCACATAAAAAAGGACAACAACTACCGATGCATCGTTCTCGTTCAGTTCCCGTGCTTTCAGAAGATGGAAAAACATATGTAGGTGGCATGTTTCGTATAGTTCCTACCACACCACGGTTGGCTGTGAGTAATGCTACATCTATGAAATCTCCACCTGACGATACTGTTGAAAATGAAGATGGAGAAGATATTCCTGAAGATGAAGCCGTTTGCAGAATTTGTTTGATTGAATTGGGAGAAGGTGGTGATAGCCTTAAAATGGAGTGTAGCTGCAAGGGTGAACTTGCACTGGCGCATCAAGAGTGTGCAGTTAAATGGTTTAGCATTAAAGGCAACAGAACATGTGATGTGTGCAAGCAGGAAGTTCAGAACCTACCTGTCACTCTTTTAAGAGTTCTAAATGGCCAAGCACTAAACTTGACAAGGAGCAGAAGTCAACAATACAGGACTTGGCAAAATGTTCCCATTCTTGTGATTATCAACATCCTAGCATACTTTTGTTTTCTTGAGCAGCTACTAGTTTCAAGTATGGGATCTGGTGCTGTTGTCATTTCTCTCCCTTTTTCTTGTATACTTGGTCTACTTGCAAGCATGACATCCACAACAATGGTAAGGAGAGAACATGTTTGGGCTTATGGAATTGTCCAGTTTGTTATGGTGGTTCTTGCCGGACGTCTTTCCTATTCACTGCTTAATAAGCAAGCTGTGCTATCTATCCTAGTTGCTACATTTACTGGGTTTGGAGCTGTAATGTGTGGAGCTTATATTCTTACTGAGTTTTTGAAGTGGAGAAGAAGATGGCTTAGTCAGTTGAATCAACAGCATGGTTCCCAACAGATGGTACTGCCTCAGACTGATTCTCAACATCATGAAAATAATGTGAGAGACACATGA 1386 0.4091 MATQAHDFPKINDQSTSSRPHNLIQKGVFEITEELPSRHAHGRRKNLILEIPTRTLDETREDFLRTNQPLIPSLRSQTNEYLGSSSTKNKSTNKTHITKLSFKLHNMSSDVEEASIPTLEGSPPEPLQKPVISRTLSSSGKKISSLPVTPIAQSEHGGNIAYPASHKKGQQLPMHRSRSVPVLSEDGKTYVGGMFRIVPTTPRLAVSNATSMKSPPDDTVENEDGEDIPEDEAVCRICLIELGEGGDSLKMECSCKGELALAHQECAVKWFSIKGNRTCDVCKQEVQNLPVTLLRVLNGQALNLTRSRSQQYRTWQNVPILVIINILAYFCFLEQLLVSSMGSGAVVISLPFSCILGLLASMTSTTMVRREHVWAYGIVQFVMVVLAGRLSYSLLNKQAVLSILVATFTGFGAVMCGAYILTEFLKWRRRWLSQLNQQHGSQQMVLPQTDSQHHENNVRDT 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02367 461 PANTHER OS02G0165000 PROTEIN 24 455 - -
Cca03g02367 461 SMART ringv_2 234 283 IPR011016 GO:0008270
Cca03g02367 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 220 290 IPR013083 -
Cca03g02367 461 CDD RING_CH-C4HC3_MARCH 235 283 - -
Cca03g02367 461 MobiDBLite consensus disorder prediction 1 22 - -
Cca03g02367 461 ProSiteProfiles Zinc finger RING-CH-type profile. 227 289 IPR011016 GO:0008270
Cca03g02367 461 SUPERFAMILY RING/U-box 231 286 - -
Cca03g02367 461 MobiDBLite consensus disorder prediction 8 22 - -
Cca03g02367 461 MobiDBLite consensus disorder prediction 207 226 - -
Cca03g02367 461 Pfam RING-variant domain 235 282 IPR011016 GO:0008270
Cca03g02367 461 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 24 455 - -
Cca03g02367 461 MobiDBLite consensus disorder prediction 442 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02367 Cca-Chr3 44650453 44655403 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02367 155 289 C3H Transcription Factor Family AT2G37950 31.884 2.56e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02367 - - gmx:100789854 703.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02367 03 44650453 44655403 Cca03g02367 03 44650453 44655403 ECH