Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02363 ATGCTTAATGTGATGGGTTTCTGTGGATTGCTCTACACATTCTTCATACTCAATTTTGTTTTGGTCTGCCAACTAATTCTCCTCCAACCTCTCGTTTCTGCTTCTGATGGAATGCCTGAAAATGCTGCTGAGTTGTTTGAACGGGCATCACAAAGCATAAAAGTGAAACATTATACCGAGGCTCTTGATGATCTAAATGCTGCAATAGAAGCAGACCCAACCCTTTCCAAAGCATACCTTTTCAGAGCCTCTGTTCTTCGTCAGATATGCAGATATGAGCAATCTGAGAGGAGCTACAAAAAGTTTCTGGAGTTAAAACCTGGAGATTCAGCTGCAGAAAAAGAGCTCAGTCAACTATTGCAGGCTCAAAGTGCCCTAGAAACAGCTCAGTCCCTCTATGATTCGGGCAACTTCTCAAAATCTTTGGAATACATTGATAAAGTTGTTCTTGTTTTTTCACCAGCTTGCACTAAGGCTAAGCTTCTTAAAGTGAGAGTGTTGATATCTGACAAAGAGTATGAGGGTGCCATTGCTGAGTCTGGGTTTCTTCTCAAGGAAGATGAAAATAATTTAGAGGCATTGTTGTTACGTGGTCGTGCATATTACTATTTAGCCGATCATGATGTTGCGACAAGGCATTTCCAGAAAGGTCTCCGCCTAGATCCAGAGCACAGTGAACTGAAAAAAGCATATTTTGGATTGAAAAATCTACTCAAAAAGAGTAAAAGTGCCGAAGATAATGCAAGTAAGGGTAAACTACGTGTCTCAGTGGAGGAATTCAAAGCTGCCCTTGCTGTTGACCCTAACCATCTTGCACACAATGTACATCTTCATCTTGGCTTATGTAAAGTGCTAGTCAAGCTTGGCAGAGGAAAAGATGCCTTGGACAGTTGTAGTGAAGCTCTTAAGATGAATGAGGAGCTTGTTGAAGCTCTTGTTCAGAGAGGAGAAGCTAAACTCTTAATAGAGGATTGGGAGGGAGCTGTGGAGGATCTGAGATCAGCTGCTCAAAAATCTCCCCAGGATATGAATATCCGTGAAGCGGTAATGAGGGCTGAGAAAGCTTTAAAGATAAGCAAACGCAAGGATTACTACAAAATCTTGGGAATTTCCAAAACTGCTTCCGCTGCTGATATAAAGCGTGCCTACAAGAAACTTGCCTTACAATGGCACCCAGATAAGAATGTTGACAATAGGGAAGAAGCAGAGGCTAAATTCAGAGAAATTGCTGCTGCATATGAGGTTCTAAGTGATGAAGACAAACGTGTAAGATATGACAGGGGGGAGGACCTTGAAGAGAATGGAATGGGTGGTGGCGGGGGTGGTGGCGGCTTCAACCCTTTCGGTGGTGGGGGGCAGCAGTTTACCTTTACTTTTGATGGTGGCTTCCCTGGTGGTGGTGGCTTCGGTGGAGGCTTTCCTGGTGGTGGATTTGGAGGGGGTTTTCCTGGCGGGTATGAATTCCATTTTTGA 1473 0.4365 MLNVMGFCGLLYTFFILNFVLVCQLILLQPLVSASDGMPENAAELFERASQSIKVKHYTEALDDLNAAIEADPTLSKAYLFRASVLRQICRYEQSERSYKKFLELKPGDSAAEKELSQLLQAQSALETAQSLYDSGNFSKSLEYIDKVVLVFSPACTKAKLLKVRVLISDKEYEGAIAESGFLLKEDENNLEALLLRGRAYYYLADHDVATRHFQKGLRLDPEHSELKKAYFGLKNLLKKSKSAEDNASKGKLRVSVEEFKAALAVDPNHLAHNVHLHLGLCKVLVKLGRGKDALDSCSEALKMNEELVEALVQRGEAKLLIEDWEGAVEDLRSAAQKSPQDMNIREAVMRAEKALKISKRKDYYKILGISKTASAADIKRAYKKLALQWHPDKNVDNREEAEAKFREIAAAYEVLSDEDKRVRYDRGEDLEENGMGGGGGGGGFNPFGGGGQQFTFTFDGGFPGGGGFGGGFPGGGFGGGFPGGYEFHF 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02363 490 Coils Coil 399 419 - -
Cca03g02363 490 Pfam Tetratricopeptide repeat 77 108 IPR019734 GO:0005515
Cca03g02363 490 ProSiteProfiles TPR repeat profile. 191 224 IPR019734 GO:0005515
Cca03g02363 490 SMART dnaj_3 362 421 IPR001623 -
Cca03g02363 490 SUPERFAMILY Chaperone J-domain 357 466 IPR036869 -
Cca03g02363 490 SUPERFAMILY TPR-like 41 358 IPR011990 GO:0005515
Cca03g02363 490 Pfam Tetratricopeptide repeat 192 224 IPR013105 -
Cca03g02363 490 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 7 473 IPR044620 -
Cca03g02363 490 ProSiteProfiles dnaJ domain profile. 363 429 IPR001623 -
Cca03g02363 490 SMART tpr_5 191 224 IPR019734 GO:0005515
Cca03g02363 490 SMART tpr_5 309 342 IPR019734 GO:0005515
Cca03g02363 490 SMART tpr_5 76 109 IPR019734 GO:0005515
Cca03g02363 490 SMART tpr_5 275 308 IPR019734 GO:0005515
Cca03g02363 490 SMART tpr_5 122 155 IPR019734 GO:0005515
Cca03g02363 490 SMART tpr_5 42 75 IPR019734 GO:0005515
Cca03g02363 490 ProSitePatterns Nt-dnaJ domain signature. 406 425 IPR018253 -
Cca03g02363 490 PRINTS DnaJ domain signature 365 383 IPR001623 -
Cca03g02363 490 PRINTS DnaJ domain signature 383 398 IPR001623 -
Cca03g02363 490 PRINTS DnaJ domain signature 401 421 IPR001623 -
Cca03g02363 490 PRINTS DnaJ domain signature 421 440 IPR001623 -
Cca03g02363 490 Gene3D Tetratricopeptide repeat domain 32 360 IPR011990 GO:0005515
Cca03g02363 490 ProSiteProfiles TPR repeat profile. 76 109 IPR019734 GO:0005515
Cca03g02363 490 Gene3D DnaJ domain 361 470 IPR036869 -
Cca03g02363 490 Pfam DnaJ domain 363 426 IPR001623 -
Cca03g02363 490 CDD DnaJ 363 418 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02363 Cca-Chr3 44626182 44631826 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02363 359 426 C2H2 Transcription Factor Family AT1G74250 45.833 6.68e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02363 K09523 - gmx:100804685 772.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02363 03 44626182 44631826 Cca03g02363 03 44626182 44631826 ECH