Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02362 ATGCAAATGATACCCGGTGACCCCTTTTCACTATCCACTTCCATTGGAGGACTTTCCAATGAACAaaacacaaacgcaaactcaaaccctaaccctaatccCCCTCCACTCACCAAGAAGAAGAGAAATCTACCAGGAACACCAGATCCAGATGCGGAGGTTATTGCTCTCTCGCCGAAGACTCTCATGGCCACGAACCGTTTTGTCTGCGAAATATGCAACAAAGGGTTTCAGAGGGACCAGAATCTTCAGCTTCATAGGAGGGGTCACAACCTTCCATGGAAGCTACGACAGAGGTCAAACAAAGAGGTTCGAAAGAAGGTTTATATCTGTCCAGAGAAAACATGTGTCCACCACGACGCTGCAAGGGCTCTCGGCGACCTCACCGGAATAAAGAAACATTACAGCAGAAAACACGGTGAGAAAAAGTGGAAGTGTGAAAAGTGCTCCAAAAAATACGCAGTTCAATCTGATTGGAAAGCTCACACCAAAACCTGTGGCACCAGAGAGTATAAGTGTGATTGTGGCACTCTCTTTTCCAGGAAGGACAGTTTTATTACTCACAGGGCCTTCTGCGATGCCTTGGCTGAAGAGAATTCGAGACTCACCTCAGTTGCTACAAGTAGTCTAAATTTTAAGAGCGAAGATGTGATGAACGCACAGGGTGGTTTGTCGTCATGTGGATTAATCACCGGTCAGGGAATGCAAAATGTTCCACAATTTGGTTCGCATATATTCCACCAAAGACCAAACTTGTCACTGTGGTTGAACCAGGGAAATCACCACATGAACAATCCACTTGATGTGGCATCATCAAGTTCTTCAGGTTTGCCTGAGGGATTGCAAATGGCACAAGCTAATAATACCATGCTTGGTTCTTCTTCAATATTCTCCAATTTTGGAATGCCACCTTCTAATTCAACTAATCCAAACCTTTCCTTATCTCCACTAATGGGGAAAAAGGGAGAGGGTGGAGCTTCAGATTTGACAACCCTTTATTCCGAGAGTCAAAGCAATAATTCAAACTCAGCTTCACCGATGTCAGCCACTGCTCTTTTGCAAAAAGCAGCACAGATGGGTTCCACCAGAAGCACCAAGCCTTCAATTTTCAGTGGCAGTTTTGGAGTTATGAGTTCATCTTCCACCCAAACCACTACTCTCAATAGCAATACCGCAAGCCAAAACTGTGACCAACTTGACGAAGCCTTTCAAAACATGAACCAACATGAGAATTTCAATGCAACAAGCAGTGGCTCAACTATGTTGGGTAGCTCCACTAACTTCAGCTCATTGACGCATTCATCAAACGGTTTTGACGAGTTTATGATGCAAAACAATATGAAGCTCCACCACCCTGGCTCAAACACAGTGGAACATAACTTGACAAGAGATTTTCTTGGCGTGAGTGGAAGTGGAGGTGGACATCATCCATTCCTACCGCAAGAGTTGGCAAAGTTTGCTTCGTTAGGCTCATCAATGGGTTTGAACCAATTCACTGCAGGCCATCAATGA 1512 0.4365 MQMIPGDPFSLSTSIGGLSNEQNTNANSNPNPNPPPLTKKKRNLPGTPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDAARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEENSRLTSVATSSLNFKSEDVMNAQGGLSSCGLITGQGMQNVPQFGSHIFHQRPNLSLWLNQGNHHMNNPLDVASSSSSGLPEGLQMAQANNTMLGSSSIFSNFGMPPSNSTNPNLSLSPLMGKKGEGGASDLTTLYSESQSNNSNSASPMSATALLQKAAQMGSTRSTKPSIFSGSFGVMSSSSTQTTTLNSNTASQNCDQLDEAFQNMNQHENFNATSSGSTMLGSSTNFSSLTHSSNGFDEFMMQNNMKLHHPGSNTVEHNLTRDFLGVSGSGGGHHPFLPQELAKFASLGSSMGLNQFTAGHQ 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02362 503 Gene3D Classic Zinc Finger 64 91 - -
Cca03g02362 503 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Cca03g02362 503 MobiDBLite consensus disorder prediction 329 349 - -
Cca03g02362 503 MobiDBLite consensus disorder prediction 1 28 - -
Cca03g02362 503 SMART c2h2final6 68 90 IPR013087 -
Cca03g02362 503 SMART c2h2final6 109 139 IPR013087 -
Cca03g02362 503 SMART c2h2final6 144 164 IPR013087 -
Cca03g02362 503 MobiDBLite consensus disorder prediction 1 51 - -
Cca03g02362 503 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 490 - -
Cca03g02362 503 PANTHER ZINC FINGER PROTEIN JACKDAW 7 490 IPR033243 GO:0003700
Cca03g02362 503 SUPERFAMILY beta-beta-alpha zinc fingers 67 164 IPR036236 -
Cca03g02362 503 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Cca03g02362 503 MobiDBLite consensus disorder prediction 302 349 - -
Cca03g02362 503 Pfam Zinc finger, C2H2 type 68 90 IPR013087 -
Cca03g02362 503 Gene3D Classic Zinc Finger 103 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02362 Cca-Chr3 44610761 44613196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02362 1 490 IDZ Gene Family AT5G03150 49.630 3.84e-140 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca03g02362 zf-C2H2 0.0051 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02362 K25870 - gmx:100812495 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02362 03 44610761 44613196 Cca03g02362 03 44610761 44613196 ECH
Cca03g02362 03 44610761 44613196 Cca02g00843 02 23536449 23539587 PCT