Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02361 ATGTTCATGGGCAAAGATGCTAATTCAGAAATCCAACTCCCTCCTGGATTTAGATTCCACCCTTCTGACGAGGAGTTAATTGTTCACTACCTGAGAAACAAAGTGACATCATCACCCCTTCCTGCTTCATTCATAGCAGAAATAGATCTTTACAAGTATAATCCATGGGAGCTCACAAGCAAAGCTTTGTTTGGGGAGGATGAATGGTATTTCTTTACTCCTAGGGACAGGAAGTATCCCAATGGAGTGAGGCCTAATAGAGCAGCTGCTTCAGGTTATTGGAAGGCTACTGGAACTGACAAACCCATTTTCACTTCTTGTGGGATGAAGAGCATTGGAGTGAAGAAGGCCCTTGTCTTCTACAAGGGTCGTCCTCCAAAAGGATCTAAAACAGACTGGATCATGCATGAGTATCGGTTGCATGATTCCATGATCTCCAATAAAAAGCAAAGAGGGTCCATGAGACTTGATGAGTGGGTGCTGTGCCGGGTTAGACAAAAGACTATCAACCCAAGAAGCATTTGGGAAGACTCAAATGAAGTTGTTTATGAACCAACAAGCCACTTTCAACAACTGAGTGAGAACTCAAATCCTGAACCAGACAAAAACACTCTGCAGAATGAACATCCAATGTTACCTTATATTCTGGCTTCTAAGAGTGCTACGCCTAATTCTATTGGCATGGCCTCAAGCTCGGGCTTTGGTTGTAATGATGAATTAAAAACATATGCTTCATTGCTTGATGACAATTTGAATATAATAATTGGAGCACAGTTCATGGCACCTGTAGCTGAGGGCTTGTTCAATCCACTGAAGAGAAAAAACATTGAGGAAAATGAGTTGGACCTGTATGCTCCTCTCGATAAAAAACTAAGGGAAGAAGTTGATGTTGGGAAACAAAGACTTGAGAAAGATGAAAACAAAGGGTTCAATTTCAATAACTTTGACCAGTGGAGTTCCATCATACAACCTCAAGAGCTTAATAGCTTAGCCTTTACGAAATATACGTGA 1011 0.4125 MFMGKDANSEIQLPPGFRFHPSDEELIVHYLRNKVTSSPLPASFIAEIDLYKYNPWELTSKALFGEDEWYFFTPRDRKYPNGVRPNRAAASGYWKATGTDKPIFTSCGMKSIGVKKALVFYKGRPPKGSKTDWIMHEYRLHDSMISNKKQRGSMRLDEWVLCRVRQKTINPRSIWEDSNEVVYEPTSHFQQLSENSNPEPDKNTLQNEHPMLPYILASKSATPNSIGMASSSGFGCNDELKTYASLLDDNLNIIIGAQFMAPVAEGLFNPLKRKNIEENELDLYAPLDKKLREEVDVGKQRLEKDENKGFNFNNFDQWSSIIQPQELNSLAFTKYT 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02361 336 Gene3D NAC domain 22 170 IPR036093 GO:0003677|GO:0006355
Cca03g02361 336 SUPERFAMILY NAC domain 9 167 IPR036093 GO:0003677|GO:0006355
Cca03g02361 336 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 8 296 - -
Cca03g02361 336 Pfam No apical meristem (NAM) protein 14 140 IPR003441 GO:0003677|GO:0006355
Cca03g02361 336 PANTHER NAC TRANSCRIPTION FACTOR 56 8 296 - -
Cca03g02361 336 ProSiteProfiles NAC domain profile. 13 167 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02361 Cca-Chr3 44582348 44584403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02361 6 167 NAC Transcription Factor Family AT1G69490 69.753 1.46e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca03g02361 NAM 2.2e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02361 - - gmx:100788799 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02361 03 44582348 44584403 Cca03g02361 03 44582348 44584403 ECH