Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02358 ATGGGGCATAGGCACTTATATAACCCATCTTCGTTGTTTGAGGGTGAGCCTGACCAGAATTGGAATCATATGCATACTGATCAACATTATGTGCACCTTGGTAGGACTAGCACTTCAGAGAATGGTTCTTTTATTTATCCTGCAGAAAATATGTCTGTAGATGGCATTTCTTTCCCCTCTCATTGGAACTCTTCCACAAGATCAAATGGATATGCATCCTCAAGTCTCAACATTGATTTACCTCCTCACCAGTCAGATGCATCAGGCTCTTCTAATGATCATTTTGTGCATTCGTCTAGTGCTGGAGCATTCTTTGCCATGCCTGAAAATTATGTACACCAGCCTTCTTCCAATTATGACAGACAAACATTTCATGTTGATGGTGGTTTTATTGATCTTACAATTGGAAATGGACAAGGGCCTCACAAGCGTAAGAGTCCTGGAATTCCTTCAGTCTATGAGAGAGGTGGTACAAGTAGATACTTTAATGCTGGGAGTTCATCTGATCTTCCTATATCTTCAGAGTTATGGCAGGAGAAGCCAAATATTGATTCTCAATATATGCCCTGGGATCATTTTAATATGACCCCCGCATTCAGGGGTACTGGCCTTTCAATAAAGGGTGAGGGTTCTCTGCGGAATGTGAGGAGTCGTTCTGCACTTGATTTGGATTCTGACCTGGCTAGGACCCATTTATCAGGTAATCATTCGCACAACTACCCTACTGTTCCACCAGTGGGCCATTCTGGCATGGTGGATCTTTCTAGTCAGACTTCTACTACATTGACAAGAGATTGGAGCCAAATGAACATACCTCCAGCTAATGGAAGGGTGTTGTTACCAGATGCAAGTGCTTTTGGTCTTGAGACTGGTCATTTCCTTGTTGGAAGTGGTGCTACTACTAGCAATCCTTCGGTTGATATTGGGGGTTTCCATCATGAATTTGGTACCAGCAGAAATCCTACTGCTCCTCAAAGTTTTCATAATAATCCATCTCAGACTGCTAGGGGAATTCGAAGCAACTATTCCCAGAGATCCACTCCAACTTTTAGGGCTTCTTCAAGCTTGCACTTGGGACATGGGACATCTGATGATGGATTGCCTATGGTAGCTGAAAGTTACCCTTCTAGACATCCAAGGCCATTGAGCACCATTGGCTGGCGGAATGGTGATAGAAATGGGAGGTCAAGAATTTCTAGTGAAAGATATCGATCATTGACTGAGGAAAGTGGTCTCCATGATCGATTTTCTTCTGAGGGTTTCATGGTTGTTGAGCGTGCATCACTGTATGGTTCCAGGAATATGCTTGATCAGCACCGAGAAATGAGGATGGACATAGATAACATGAGTTATGAGGAACTACTTGCACTTGGTGAGAGGATTGGCTATGTGAACACAGGACTCTCTGAGGACGTGCTTTCCAAATGTTTGATGGAAACAATACATTGTTCATCTGAACAAAATCAAGACGAAGGAAACTGTGTAATATGTCTGGAAGAGTACAAGAACATGGACGATGTTGGAAAACTTAACACTTGTGGACATGACTACCATGTGAGCTGCATCAAAAAGTGGTTGTCTATGAAGAAATTATGTCCTATCTGCAAAGTATCTGCTTCGCCTGAGGATACGAAGGATGAATAA 1644 0.427 MGHRHLYNPSSLFEGEPDQNWNHMHTDQHYVHLGRTSTSENGSFIYPAENMSVDGISFPSHWNSSTRSNGYASSSLNIDLPPHQSDASGSSNDHFVHSSSAGAFFAMPENYVHQPSSNYDRQTFHVDGGFIDLTIGNGQGPHKRKSPGIPSVYERGGTSRYFNAGSSSDLPISSELWQEKPNIDSQYMPWDHFNMTPAFRGTGLSIKGEGSLRNVRSRSALDLDSDLARTHLSGNHSHNYPTVPPVGHSGMVDLSSQTSTTLTRDWSQMNIPPANGRVLLPDASAFGLETGHFLVGSGATTSNPSVDIGGFHHEFGTSRNPTAPQSFHNNPSQTARGIRSNYSQRSTPTFRASSSLHLGHGTSDDGLPMVAESYPSRHPRPLSTIGWRNGDRNGRSRISSERYRSLTEESGLHDRFSSEGFMVVERASLYGSRNMLDQHREMRMDIDNMSYEELLALGERIGYVNTGLSEDVLSKCLMETIHCSSEQNQDEGNCVICLEEYKNMDDVGKLNTCGHDYHVSCIKKWLSMKKLCPICKVSASPEDTKDE 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02358 547 ProSiteProfiles Zinc finger RING-type profile. 494 536 IPR001841 -
Cca03g02358 547 CDD RING-H2_TTC3 493 536 - -
Cca03g02358 547 SUPERFAMILY RING/U-box 482 539 - -
Cca03g02358 547 Pfam Ring finger domain 493 536 IPR001841 -
Cca03g02358 547 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 461 541 IPR013083 -
Cca03g02358 547 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 540 - -
Cca03g02358 547 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 540 IPR045191 GO:0061630
Cca03g02358 547 SMART ring_2 494 535 IPR001841 -
Cca03g02358 547 MobiDBLite consensus disorder prediction 71 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02358 Cca-Chr3 44553222 44555550 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02358 1 546 C3H Transcription Factor Family AT2G37150 42.171 3.92e-115 350
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02358 - - gmx:100803627 1003.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02358 03 44553222 44555550 Cca03g02358 03 44553222 44555550 ECH
Cca03g02358 03 44553222 44555550 Cca02g00847 02 23615227 23617668 PCT