Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02355 ATGGCCGATGACTTCGAGTTCGCAGATAAAGTTCCTCCTTCCTTCGATCGCGTGGGAAATGTGATCAAGGATTCCGGATCCCATGGATTCAACCCAGGCTTAATTGTCCTCCTGGTCGTTGGTGGTTTGCTGTTAACATTCCTCATTGGAAATTACGTGCTCTATACGTATGCACAGAAGACCCTCCCTCCTAGAAAAAAGAAGCCTGTTTCAaagaagaagatgaagaaggagaGACTGAAGCAAGGTGTCTCTGCACCAGGAGAGTAG 270 0.4407 MADDFEFADKVPPSFDRVGNVIKDSGSHGFNPGLIVLLVVGGLLLTFLIGNYVLYTYAQKTLPPRKKKPVSKKKMKKERLKQGVSAPGE 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02355 89 PANTHER DNA-BINDING PROTEIN S1FA2 3 89 IPR006779 GO:0003677|GO:0005634|GO:0006355
Cca03g02355 89 MobiDBLite consensus disorder prediction 65 89 - -
Cca03g02355 89 Pfam DNA binding protein S1FA 26 89 IPR006779 GO:0003677|GO:0005634|GO:0006355
Cca03g02355 89 PANTHER DNA-BINDING PROTEIN S1FA1-RELATED 3 89 - -
Cca03g02355 89 MobiDBLite consensus disorder prediction 65 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02355 Cca-Chr3 44529244 44531773 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF S1Fa-like Cca03g02355 S1FA 8.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02355 - - gmx:100499820 156.762