Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02351 ATGGCCAACGACTCGTCGTTTTTGTTCTCTGGCATTCGTTTCGATAGAAAGAAGTTCGGCTCCGACATTGCGAGGTTCCAGAAAAAAGATAGCGATACCGATTCCGCGAAGATTTGGAGCGCCACAGAAGACGAAAGCGTGACAACGATAGAAACAGCGGAAAAGAGAACAACGTCTACGAAGAAGAGGAAGCGCAAGGGAACAAAAGAAGCGGTTGAAGGATTCAGCGTGTTCAGAAATTCGACGTCTGTGGCGCAGTCGAATGATGAAGTTCGAGCTGAAGAGGAGTCCGTTGAGCTGAATAAGAAGGAGCACAATAGGCAACTCGAGCGCGATGCTATATTCAGGAAGAAGCACAACCTTCATGTCTCTGGTTATAACGTGCCGTCTCCGCTTCAAAGCTTTGATGAGTTGAAATCTAGATATAACTGTCCTTCATATTTGTTGCGCAATCTGAAGGAACTTGGATTCAAAGAACCAACGCCTATCCAAAGGCAGGCTATGCCAGTACTTTTACAAGGTCGTGAATGCTTTGCTTGTGCACCAACTGGCTCTGGGAAAACCCTTGCGTTCGTTTGTCCAATGCTTATAAATCTCAAGACTCCAGAAAAAGATGGGATTCGAGCTGTTATCCTTTGTCCTACTCGTGAATTAACTGCTCAAACATATCGAGAGTGCAAAAAGCTTTCCAAGAGAAAAAAATTTCGTATCAAGTTAATGACTAAACATCTTTCAAGAAATGCTGATTTTTCAAAATTTCCATGTGATATACTGATAACCACACCACTTCGATTACGCTTGGCTATCAAGAGGAAGAAGGTTGATCTCAGCAGAGTTGAGTATCTTGTCCTTGATGAATCGGATAAGCTATTTGAACCTGAATTATTCAAGCAGATTGATTCTGTTATCAAGGCATGCTCAAATCCCTCCATAATACGCTCATTGTTCAGTGCTACTTTACCTGATTTTGTTGAAGATCGAGCTCGAGAACTTATGCATGATGCTGTTCGTGTAATTGTTGGCAGGAAGAATATGGCTTCAGAAACAATAAAGCAAAAATTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTCTGGCAATTCGTCAAAGCTTTGCAGAGAGTCTAAATCCTCCGGTATTGGTCTTTCTCCAAAGCAAGGAGCGAGCCAAGGAGCTGTATGGTGAACTTGCATTTGACAACATTCGAGTTGATGTCATCCATTCTGATTTGACTCAAGAAGAGCGAGAAAATGCTGTTGATAACTTCAGAGCTGGAAAAACATGGGTTTTAATTGCTACCGATGTAGTTGCCCGGGGCATGGATTTCAAAGGTGTGAACTGTGTGATCAATTATGATTTCCCAGATTCAGCTGCTGCATATGTCCACAGAATTGGTCGTTCTGGCAGAGCAGGGAGGACTGGAGAAGCGATTACTTTTTACACAGAGGAAGACATTCCATTCCTAAAGAATGTTGCTAATCTTATGGCAGCATCGGGATGTGAGGTTCCATCCTGGCTCATGGAGTTGCGCAAAAAGAAGTGGAAGAAACACCGGCCCAAAAGAGAATCAATCTCAACAAAACCCGACTTATAA 1593 0.4275 MANDSSFLFSGIRFDRKKFGSDIARFQKKDSDTDSAKIWSATEDESVTTIETAEKRTTSTKKRKRKGTKEAVEGFSVFRNSTSVAQSNDEVRAEEESVELNKKEHNRQLERDAIFRKKHNLHVSGYNVPSPLQSFDELKSRYNCPSYLLRNLKELGFKEPTPIQRQAMPVLLQGRECFACAPTGSGKTLAFVCPMLINLKTPEKDGIRAVILCPTRELTAQTYRECKKLSKRKKFRIKLMTKHLSRNADFSKFPCDILITTPLRLRLAIKRKKVDLSRVEYLVLDESDKLFEPELFKQIDSVIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASETIKQKLVFTGSEEGKLLAIRQSFAESLNPPVLVFLQSKERAKELYGELAFDNIRVDVIHSDLTQEERENAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSAAAYVHRIGRSGRAGRTGEAITFYTEEDIPFLKNVANLMAASGCEVPSWLMELRKKKWKKHRPKRESISTKPDL 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02351 530 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 349 510 IPR001650 -
Cca03g02351 530 SMART ultradead3 156 353 IPR014001 -
Cca03g02351 530 Coils Coil 88 108 - -
Cca03g02351 530 Gene3D - 338 515 IPR027417 -
Cca03g02351 530 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 6 527 - -
Cca03g02351 530 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 483 IPR027417 -
Cca03g02351 530 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 137 165 IPR014014 GO:0003724
Cca03g02351 530 MobiDBLite consensus disorder prediction 41 68 - -
Cca03g02351 530 SMART helicmild6 390 471 IPR001650 -
Cca03g02351 530 CDD SF2_C_DEAD 350 480 - -
Cca03g02351 530 Pfam Helicase conserved C-terminal domain 368 471 IPR001650 -
Cca03g02351 530 Pfam DEAD/DEAH box helicase 161 325 IPR011545 GO:0003676|GO:0005524
Cca03g02351 530 Gene3D - 81 337 IPR027417 -
Cca03g02351 530 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 168 338 IPR014001 -
Cca03g02351 530 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 527 - -
Cca03g02351 530 MobiDBLite consensus disorder prediction 86 105 - -
Cca03g02351 530 MobiDBLite consensus disorder prediction 89 105 - -
Cca03g02351 530 CDD DEADc_DDX52 148 341 IPR044764 GO:0003724|GO:0005524|GO:0030490
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02351 Cca-Chr3 44479219 44484316 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02351 131 509 Eukaryotic Initiation Factors Gene Family AT3G19760 31.759 2.64e-56 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02351 K14779 - gmx:100800969 925.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02351 03 44479219 44484316 Cca03g02351 03 44479219 44484316 ECH