Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02348 ATGGGGAGGAAAGGAAATTGGTTTTCTAGCGTGAAGAAGGCTCTCAGCCCTGACCCAAAGGAGAAGAAAGATCAGAAATCAAGTAAATCTAAGAAGAAATGGTTTGGGAAGCAAAAGTTGCAGACTTCAGTCTCATACCCAGAAACTGATAAAACACCACCATCTATTCCTCCTCCACCAGAAGAGATTAAAATAACTGATATTGAAACTGAAAACAGTCATGATCATGATCATGTTGTTGAAGTTGCAACTGCCATGGATGCTGAGGAACCCGTTCCTTCTGTTCAGATAGAACCTGTTAGGGTTGAACCTGCCCCAATTGCTCGTTTTGCTGGTAAACCAAAGGATGAAGTGGCAGCAATCAAAATTCAAACAGCTTTTAGGGGACACTTGGCAAGAAGGGCATTGCGGGCTTTAAGGGGGTTGGTCAGGTTGAAATTATTGATGGAAGGCCCGGTTGTAAAACGCCAAGCCACAAGTACCCTCCGCTCTATGCAGACGTTATCTCGCTTGCAGTCTCAGATTCGTTCCAGGAGGATCAGAATGTTAGAGGAGAATCAAGCTCTGCAGAGACAGCTCTTACAGAAACATGCAAGAGAGCTTGAGAGCATGCGGATGGGAGAGGAATGGGACGACAGCCTACAATCAAAAGAACAAATCGAAGCCAAGTTACTAAGCAAGTATGAGGCAGCTATGAGAAGAGAAAGGGCACTGGCTTATGCATTCACTCATCAGCAAAACTGGAAGAACTCATCTAGGTCTGTAAATCCAATGTTCATGGATCCAACCAATCCTACATGGGGTTGGAGTTGGTTGGAACGATGGATGGCAACCCGGCCTTTGGACAGCCATGGCCAGATGGATAAAGAGTTGAATGACCATTCATCCATAAAAGGCTCAAGCCGCAGCATTACCGGTGGAGAAATCAGCAAGTCATTTGCTCGTTTCCAGCTCAATTCTGAAAAGCAATCTCCATCAGCCAGCCAAAATCTTGGCTCGCCAAGCTTTCAGTCTACTCCTTCCAAGCCAGCTTCATCATCTGCTAAGAAAACAAAGAAGGCAAGCCCAAGGGGCAGCTGCATTACAGATGAGGACTCGAAAAGCTTGGTCAGTGTACAGTCAGATCGGTTCCGGAGGCACTCCATTGCTGGTTCTTCGGTGAGAGATGACGAGAGCCTTGCTAGCTCTCCAGCAGTTCCAAGCTACATGGTGCCAACTCAATCTGCAAAAGCCAAGTCCAGGACACAGAGTCCATTAGCCCCAGAAAATGGAAAAACTGAGAAAGGATCTTTTGGAACTGCAAAGAAGCGTCTTTCTTTCCCAGCTTCACCTGCCAGACCAAGGCGCCATTCAGGGCCACCAAAGGTAGAAAGCAGCTTAAATGCAGAGTTAGCTGTGGACAATGGTGTGGCCAGTTGA 1419 0.4672 MGRKGNWFSSVKKALSPDPKEKKDQKSSKSKKKWFGKQKLQTSVSYPETDKTPPSIPPPPEEIKITDIETENSHDHDHVVEVATAMDAEEPVPSVQIEPVRVEPAPIARFAGKPKDEVAAIKIQTAFRGHLARRALRALRGLVRLKLLMEGPVVKRQATSTLRSMQTLSRLQSQIRSRRIRMLEENQALQRQLLQKHARELESMRMGEEWDDSLQSKEQIEAKLLSKYEAAMRRERALAYAFTHQQNWKNSSRSVNPMFMDPTNPTWGWSWLERWMATRPLDSHGQMDKELNDHSSIKGSSRSITGGEISKSFARFQLNSEKQSPSASQNLGSPSFQSTPSKPASSSAKKTKKASPRGSCITDEDSKSLVSVQSDRFRRHSIAGSSVRDDESLASSPAVPSYMVPTQSAKAKSRTQSPLAPENGKTEKGSFGTAKKRLSFPASPARPRRHSGPPKVESSLNAELAVDNGVAS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02348 472 MobiDBLite consensus disorder prediction 286 305 - -
Cca03g02348 472 MobiDBLite consensus disorder prediction 399 423 - -
Cca03g02348 472 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 468 - -
Cca03g02348 472 SMART iq_5 115 137 IPR000048 GO:0005515
Cca03g02348 472 MobiDBLite consensus disorder prediction 319 472 - -
Cca03g02348 472 Pfam IQ calmodulin-binding motif 119 137 IPR000048 GO:0005515
Cca03g02348 472 Gene3D - 101 142 - -
Cca03g02348 472 ProSiteProfiles IQ motif profile. 116 144 IPR000048 GO:0005515
Cca03g02348 472 PANTHER IQ-DOMAIN 5-RELATED 1 468 - -
Cca03g02348 472 MobiDBLite consensus disorder prediction 319 353 - -
Cca03g02348 472 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02348 Cca-Chr3 44457326 44461833 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02348 1 472 IQD Protein Family AT5G03040 53.659 5.26e-153 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02348 - - gmx:100777223 713.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02348 03 44457326 44461833 Cca03g02348 03 44457326 44461833 ECH
Cca03g02348 03 44457326 44461833 Cca02g00857 02 23824618 23828693 PCT