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Gene search
Sequence information
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Gene
Cds
Cds_length
GC_content
Pep
Pep_length
Cca03g02346
ATGGGGAAGACACGTGGAATGGGAGCTGCCCGCAAGTTGAAGTCACACCGAAGGAGACAAAGATGGGCTGACAAGGCATACAAAAAGTCCCATCTTGGCAATGAATGGAAGAAGCCTTTTGCTGGTTCATCCCATGCAAAGGGCATTGTTCTTGAAAAGATCGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTAGAAAATGTGCCAGGGTTCAACTCATCAAAAATGGCAAGAAGATTGCTGCATTTGTGCCAAACGATGGTTGCTTAAATTACATTGAAGAGAATGATGAAGTATTGATTGCTGGATTTGGACGAAAAGGTCACGCCGTGGGTGATATTCCTGGTGTCCGGTTCAAGGTTGTGAAGGTTTCTGGTGTGTCTCTCCTGGCTCTGTTCAAGGAGAAGAAGGAGAAGCCAAGGTCTTAA
429
0.4615
MGKTRGMGAARKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
142
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Annotation information
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Seq ID
Length
Analysis
Description
Start
End
IPR
GO
Cca03g02346
142
ProSitePatterns
Ribosomal protein S12 signature.
59
66
IPR006032
GO:0003735|GO:0005840|GO:0006412
Cca03g02346
142
SUPERFAMILY
Nucleic acid-binding proteins
20
140
IPR012340
-
Cca03g02346
142
PIRSF
RPS12p_RPS12a_RPS23e_RPS12o
16
142
IPR006032
GO:0003735|GO:0005840|GO:0006412
Cca03g02346
142
PANTHER
30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER
1
142
IPR006032
GO:0003735|GO:0005840|GO:0006412
Cca03g02346
142
PANTHER
BNACNNG03140D PROTEIN
1
142
-
-
Cca03g02346
142
Pfam
Ribosomal protein S12/S23
31
141
IPR006032
GO:0003735|GO:0005840|GO:0006412
Cca03g02346
142
CDD
Ribosomal_S23
26
139
IPR005680
GO:0003735|GO:0006412|GO:0015935
Cca03g02346
142
TIGRFAM
uS12_E_A: ribosomal protein uS12
6
141
IPR005680
GO:0003735|GO:0006412|GO:0015935
Cca03g02346
142
MobiDBLite
consensus disorder prediction
9
25
-
-
Cca03g02346
142
MobiDBLite
consensus disorder prediction
1
28
-
-
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Duplication type information
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Gene
Chromosome
Start
End
Duplicated_type
Cca03g02346
Cca-Chr3
44429410
44431275
Wgd
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Functional genes information
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Gene
Gene_start
Gene_end
Function
Ath_gene
Identity(%)
E-value
Score
Cca03g02346
1
142
Cytoplasmic Ribosomal Protein Gene Family
AT5G02960
95.775
3.84e-96
271
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Pathway information
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Query
KO
Definition
Second KO
KEGG Genes ID
GHOSTX Score
Cca03g02346
K02973
-
rcu:8283822
288.115
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Event-related genes
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Gene_1
Chr_1
Start_1
End_1
Gene_2
Chr_2
Start_2
End_2
Event_name
Cca03g02346
03
44429410
44431275
Cca03g02346
03
44429410
44431275
ECH
Cca03g02346
03
44429410
44431275
Cca04g00736
04
7333145
7335805
ECH
Cca03g02346
03
44429410
44431275
Cca02g00866
02
23992174
23994107
PCT
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