Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02346 ATGGGGAAGACACGTGGAATGGGAGCTGCCCGCAAGTTGAAGTCACACCGAAGGAGACAAAGATGGGCTGACAAGGCATACAAAAAGTCCCATCTTGGCAATGAATGGAAGAAGCCTTTTGCTGGTTCATCCCATGCAAAGGGCATTGTTCTTGAAAAGATCGGTATTGAGGCTAAGCAGCCCAACTCTGCCATTAGAAAATGTGCCAGGGTTCAACTCATCAAAAATGGCAAGAAGATTGCTGCATTTGTGCCAAACGATGGTTGCTTAAATTACATTGAAGAGAATGATGAAGTATTGATTGCTGGATTTGGACGAAAAGGTCACGCCGTGGGTGATATTCCTGGTGTCCGGTTCAAGGTTGTGAAGGTTTCTGGTGTGTCTCTCCTGGCTCTGTTCAAGGAGAAGAAGGAGAAGCCAAGGTCTTAA 429 0.4615 MGKTRGMGAARKLKSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02346 142 ProSitePatterns Ribosomal protein S12 signature. 59 66 IPR006032 GO:0003735|GO:0005840|GO:0006412
Cca03g02346 142 SUPERFAMILY Nucleic acid-binding proteins 20 140 IPR012340 -
Cca03g02346 142 PIRSF RPS12p_RPS12a_RPS23e_RPS12o 16 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
Cca03g02346 142 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 1 142 IPR006032 GO:0003735|GO:0005840|GO:0006412
Cca03g02346 142 PANTHER BNACNNG03140D PROTEIN 1 142 - -
Cca03g02346 142 Pfam Ribosomal protein S12/S23 31 141 IPR006032 GO:0003735|GO:0005840|GO:0006412
Cca03g02346 142 CDD Ribosomal_S23 26 139 IPR005680 GO:0003735|GO:0006412|GO:0015935
Cca03g02346 142 TIGRFAM uS12_E_A: ribosomal protein uS12 6 141 IPR005680 GO:0003735|GO:0006412|GO:0015935
Cca03g02346 142 MobiDBLite consensus disorder prediction 9 25 - -
Cca03g02346 142 MobiDBLite consensus disorder prediction 1 28 - -
Cca03g02346 142 Gene3D - 25 142 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02346 Cca-Chr3 44429410 44431275 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02346 1 142 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 95.775 3.84e-96 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02346 K02973 - rcu:8283822 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02346 03 44429410 44431275 Cca03g02346 03 44429410 44431275 ECH
Cca03g02346 03 44429410 44431275 Cca04g00736 04 7333145 7335805 ECH
Cca03g02346 03 44429410 44431275 Cca02g00866 02 23992174 23994107 PCT