Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02343 ATGTTTTCCCTTTTCCCCTTTCTCAAATTAGGGTTCCAAATGGCAGAGGGTCCTGCAAGCCCCGGCTGCGGCAGTCATGAGAGCAGCGACCACAGCCCTCGCTCCAACGTCCGCGAGCAAGACAGGTACCTTCCCATCGCCAACATAAGCCGCATCATGAAGAAGGCTCTTCCCGCCAACGGTAAAATCGCCAAGGACGCCAAAGAGACTGTTCAGGAATGCGTCTCCGAATTCATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGTCAGAGAGAGAAGAGGAAGACTATTAACGGTGATGATTTGCTCTGGGCGATGGCCACACTCGGTTTCGAGGATTATATTGATCCTCTTAAAATTTACCTCAACAGATACAGAGATATGGAGGGTGATACCAAGGGCTCAGCCAAGGGTGGAGAATCATCTGCTAAGAAAGATGTTCAACCAAGTCCTAATGCCCAGCTAGCTCATCAAGGTACTTTTTCTCAAAGTGTTAGTTACACAAATTCTCAGGGTCAGCATATGATGGTTCCAATGCAAGGCCCAGAGTAG 555 0.4919 MFSLFPFLKLGFQMAEGPASPGCGSHESSDHSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLNRYRDMEGDTKGSAKGGESSAKKDVQPSPNAQLAHQGTFSQSVSYTNSQGQHMMVPMQGPE 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02343 184 MobiDBLite consensus disorder prediction 133 184 - -
Cca03g02343 184 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 14 171 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cca03g02343 184 ProSitePatterns NF-YB/HAP3 subunit signature. 74 90 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cca03g02343 184 MobiDBLite consensus disorder prediction 146 177 - -
Cca03g02343 184 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 43 107 IPR003958 -
Cca03g02343 184 Gene3D Histone, subunit A 30 172 IPR009072 GO:0046982
Cca03g02343 184 SUPERFAMILY Histone-fold 40 143 IPR009072 GO:0046982
Cca03g02343 184 MobiDBLite consensus disorder prediction 19 40 - -
Cca03g02343 184 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Cca03g02343 184 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Cca03g02343 184 PRINTS CCAAT-binding transcription factor subunit A signature 109 127 - -
Cca03g02343 184 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 14 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02343 Cca-Chr3 44401236 44404339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02343 14 182 CCAAT-HAP3 Transcription Factor Family AT2G37060 77.401 3.50e-88 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Cca03g02343 CBFD_NFYB_HMF 1.3e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02343 K08065 - gmx:100820170 328.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02343 03 44401236 44404339 Cca02g00870 02 24069604 24073262 PCT