Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02342 ATGGAGAGTACctcactcttcttcgtattctctctcgctctctcgctcttacttctctTGCATTTTTCCTTCGCTCAGATAATGCAAGGTTTTGTAAGTTTGGACTGTGGTGGTTCAGAAAAATTCACTGATGAAATTGGTCTTCAATGGACTCCTGATGATAAGCTTACTTATGGTGGACAAATAAGTACTATATCAGTTGCAAATGAGACACGGAAGCAATACACAACACTACGACACTTTCCTGCTGATTCCAGGAAATACTGCTACACTCTTGATGTTGTCAGTAGGACTAGGTACCTACTGAGGGCCACCTTCTTGTATGGGAACTTTGACAATAACAATGTTTATCCAAAATTTGACATTTCTCTTGGGGCTACACATTGGTCTTCTATTGTTATATCTGATGCTAATAGTATAGAAATGCGAGAGCTTATATTTTTGGCTTCGAGTCCTACAGTGAGTGTGTGCTTATCGAATGCAACAACCGGACAACCATTCATATCTACACTTGAACTTCGGCAATTCAATGGTTCAGTTTATTATACAGAATTTGAGGATCAGTTTTACCTCAGTGTCTCTGCAAGGATAAATTTTGGTGCAGAGAGTGATGCTCCAATTAGGTATCCTGATGATCCTTTTGATAGAATTTGGGAGTCGGACTCTGTGAAGAAAGCTAATTATCTTGTTGATGTTGCTGCTGGAACCGAGAAAATTTCTACAAATGCACCAATTGATGTTAACAGAGATGAAATGCCACCCGTGAAAGTGATGCAGACAGCTGTAGTGGGTACAAATGGATCTCTAACTTACCGGTTGAACTTGGATGGTTTTCCTGGAACTGGTTGGGCATTCACCTATTTTGCAGAGATTGAGGATTTGGCTCCTGATGAATCCAGAAAATTCAGGCTAGTACTTCCTGGCCAGCCTGATCTTAGCAAGGCTGTTGTAAATATTGAAGAAAATGCTCAAGGGAAATATCGCCTCTATGAACCAGGATTTACAAACATATCCCTACCCTTTGTGCTCTCTTTTAGATTTGGCAAGACATATGATTCTTCCAGGGGACCTCTCCTAAATGCCATGGAGATAAATATGTATCTGGAAAAAAATGGCGGTTCTCTAGATGGAGCAGCTATTTCAAGTCTACTTTCAGACTACTCTGCAGCAGACTGGGCCCAAGAAGGTGGTGATCCATGTCTGCCTGTTCCATGGTCATGGGTCCGATGTAACTCAGATCCACAACCAAGAATAGTTTCAATCTTGTTATCCAATAAAAATCTGACAGGGAATATTCCTTTAGACATCACCAAATTGGTTGGTTTGGTTGAACTATGGCTAGATGGAAATATGTTGACTGGCCCATTACCAGATTTTACTGGATGCATGGACTTAAAGATCATTCATCTTGAAAACAATCAATTGACAGGCGGGCTCCCAACCTCTTTAGTGAACCTCCCAAGCTTGAGGGAACTGTATGTGCAAAATAATATGTTATCTGGAAAAATACCATCAGATCTTCTGAGCAAGGATTTGACTTTGAACTACTCTGGAAACATTAATCTTCACAAAGAAAGCAGAATAAAGGGCCACATGTATGTTATTATTGGTTCATCAGTTGGGGCTTCTGTTCTACTCTTGGCTACTGTCATATCTTGCTTTTTTATGCGTAAAGGCAAGAGGAGATATCATGAACAAGACCACATTGATTCTCTCCCTACTCAAAGGCTGGCTTCTTGGAAGAGTGACGATCCTGCAGAAGCTGCTCATTGCTTCAGTTTTTCTGAAATTGAAAATGCTACAAATAAATTTGAGAAAAAAATTGGTTCTGGTGGTTTTGGAGTTGTATACTATGGAAAACTCAAAGATGGAAAAGAGATAGCAGTTAAAGTTTTAACCAGTAATTCCTATCAAGGAAAGCGAGAGTTCTCCAATGAGGTGACTCTTCTTTCAAGAATACATCACAGAAATTTGGTACAGcttcttgggtattgccgagatgaagagaatagtatgcttgtttatgagttcatgcataatggcactctcaaggaacatctttaTGGCCCGTTAGCGCATGGACGGAGTATCAATTGGATTAAGCGCCTAGAGATTGCAGAAGATGCTGCCAAAGGGATTGAAtatcttcatacgggttgtgttcctgtcgttatccatagagacttaaaaagcagcaatattcttctcgacaagcacatgagagccaaggtttcagatttcggtctttcaaaactggcagttgatggggtttcccatgtttcaagcatagttcgggggacagtaggatatctggatcctgaGTACTATATTTCTCAGCAGCTGACTGACAAGAGTGATGTTTATAGTTTTGGTGTAATTCTTCTTGAACTCATATCTGGTCAAGAAGCAATATCGAATGAAAGCTTTGGGTTAAATTGCCGAAACATAGTCCAATGGGCAAAATTACACATTGAGAGTGGAGATATACAAGGAATTATCGATCCCTTGCTGCGGAATGACTATGACCTACAATCAATGTGGAAAATAGCAGAGAAAGCATTGATGTGTGTTCAGCCCCATGGGCATATGCGGCCATCAATTTCAGAAGTTCTAAAGGAGATCCAAGATGCAATATCTATAGAGAGACAGGCAGAATCATTAAGAGAAGGCAATTCAGATGATATGTCAAAAAATTCTTTTCATTCTTCCGCGAACTTGGGTTCAATGGATCTAGGTGGAGCTGAGAGTTACCTGTCTATTGATGAATCAATTACGCAGCCAACAGCAAGATAG 2793 0.3562 MESTSLFFVFSLALSLLLLLHFSFAQIMQGFVSLDCGGSEKFTDEIGLQWTPDDKLTYGGQISTISVANETRKQYTTLRHFPADSRKYCYTLDVVSRTRYLLRATFLYGNFDNNNVYPKFDISLGATHWSSIVISDANSIEMRELIFLASSPTVSVCLSNATTGQPFISTLELRQFNGSVYYTEFEDQFYLSVSARINFGAESDAPIRYPDDPFDRIWESDSVKKANYLVDVAAGTEKISTNAPIDVNRDEMPPVKVMQTAVVGTNGSLTYRLNLDGFPGTGWAFTYFAEIEDLAPDESRKFRLVLPGQPDLSKAVVNIEENAQGKYRLYEPGFTNISLPFVLSFRFGKTYDSSRGPLLNAMEINMYLEKNGGSLDGAAISSLLSDYSAADWAQEGGDPCLPVPWSWVRCNSDPQPRIVSILLSNKNLTGNIPLDITKLVGLVELWLDGNMLTGPLPDFTGCMDLKIIHLENNQLTGGLPTSLVNLPSLRELYVQNNMLSGKIPSDLLSKDLTLNYSGNINLHKESRIKGHMYVIIGSSVGASVLLLATVISCFFMRKGKRRYHEQDHIDSLPTQRLASWKSDDPAEAAHCFSFSEIENATNKFEKKIGSGGFGVVYYGKLKDGKEIAVKVLTSNSYQGKREFSNEVTLLSRIHHRNLVQLLGYCRDEENSMLVYEFMHNGTLKEHLYGPLAHGRSINWIKRLEIAEDAAKGIEYLHTGCVPVVIHRDLKSSNILLDKHMRAKVSDFGLSKLAVDGVSHVSSIVRGTVGYLDPEYYISQQLTDKSDVYSFGVILLELISGQEAISNESFGLNCRNIVQWAKLHIESGDIQGIIDPLLRNDYDLQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDAISIERQAESLREGNSDDMSKNSFHSSANLGSMDLGGAESYLSIDESITQPTAR 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02342 930 SMART serkin_6 602 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02342 930 SUPERFAMILY L domain-like 403 519 - -
Cca03g02342 930 Pfam Protein tyrosine and serine/threonine kinase 603 804 IPR001245 GO:0004672|GO:0006468
Cca03g02342 930 Gene3D - 192 366 - -
Cca03g02342 930 Gene3D Ribonuclease Inhibitor 379 530 IPR032675 -
Cca03g02342 930 PANTHER OS07G0107800 PROTEIN-RELATED 13 930 - -
Cca03g02342 930 SUPERFAMILY Protein kinase-like (PK-like) 587 872 IPR011009 -
Cca03g02342 930 ProSitePatterns Serine/Threonine protein kinases active-site signature. 724 736 IPR008271 GO:0004672|GO:0006468
Cca03g02342 930 Gene3D Transferase(Phosphotransferase) domain 1 678 901 - -
Cca03g02342 930 ProSiteProfiles Protein kinase domain profile. 602 878 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02342 930 PANTHER TYROSINE KINASE DOMAIN PROTEIN 13 930 - -
Cca03g02342 930 Gene3D Phosphorylase Kinase; domain 1 578 677 - -
Cca03g02342 930 CDD STKc_IRAK 608 875 - -
Cca03g02342 930 ProSitePatterns Protein kinases ATP-binding region signature. 608 630 IPR017441 GO:0005524
Cca03g02342 930 Pfam Malectin-like domain 34 364 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02342 Cca-Chr3 44390471 44399395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02342 30 712 Receptor kinase-like Gene Family AT2G37050 70.000 0.0 1006
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Cca03g02342 Malectin_like 2.8e-78 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02342 - - gmx:100784017 1748.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02342 03 44390471 44399395 Cca02g00871 02 24074045 24081462 PCT