Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02341 ATGCTGGATCTCAACCTCAACGCCGATTCCGCCTCCCACACGCCGCCGCTCTCCGCCGCGCAAATGGAGAGCTCCGGAAGCTTCAATTCCTCCGTCGTCAATGCCGCCGACACCGAAGACTCCTGCTCCTTCGGCGACGCCGTCGCCTACAACTTCGCCATCCTCAACAccgcctccgccgtcgacgacgccgccacctccgccgcGCTCCATCTCGCCGGAGAATCCTCTCTCCGGACCATCCAGCTCTTTCCGCCCGCCCAATCCGGAGACACTCCTCCGGGATGGCTGGACTTCTCCTCCATGGACCCGCACCACCGCGGCGCTGCCGCGCCGGAGCAGAGGATCGCTCCCCGGCAACCGCAGGTCAAGAAGAGCCGCCGCGGACCGCGGTCGCGGAGCTCGCAGTATCGCGGCGTTACTTTCTACCGGAGAACGGGGAGATGGGAATCGCACATTTGGTTAGTGAATAGTAATCTTTTATTATTAATTTTTTTTAGGGCGTACGATCGAGCTGCAATCAAGTTCCGTGGAGTTGATGCGGATATCAATTTCAACGTTAGCGATTACGATGAAGATATAAAGCAGATGAGTAATTTCACGAAGGATGAGTTTGTGCATATTCTGCGTCGACAGAGCACTGGCTTTTCGAGGGGAAGCTCAAAATACAGGGGAGTTACTCTTCATAAGTGCGGGCGGTGGGAAGCTCGCATGGGACAGTTTCTTGGGAAAAAGTATATATATCTGGGGCTATTTGACAGCGAGTTAGAGGCTGCAAGAGCTTATGATAGGGCTGCTATCAAGTGCAATGGAAGGGAAGCAGTTACAAACTTCGAGCCCAGCTTGTATGAAGGGGATATGATTTCTCAGTCTGATAATGAAGATAGTAAGCAAAATCTTGATCTTAACTTGGGCATAGCTCCCCCTTCTTACACTGACGGTCAAATCAAGAACACACCCAACAATGGGAGTGGTTTGAAGGTTCCGCACGGCTGGGACCAAATACCTGTCGATAAGAGAGTTATGCTTGAGCACTCTGGATCAAGATCACTGCCTGTTCAGCCACCTCCTGGCTTCTCCATGGCATCCGAGCGTCATTCTTCCGTCTGGAGTGGTAGCAATTTCTTTCCCATCTGTGAGGAAACAGCAATAGAGAAGAGGATGGAAGCTGGTCCCATGCCAAATTGGGCATGGCAAGTCCAAGGTCCTTACGGCGGGGCAACTCTTACTCCACCGTTCTCTACTGCAGCATCATCAGGATTCCCTTCAACAATAATACCATCAGCTGCGGACAGTCAAATTCATTTTCCAAGCATGACATTCCTCCACCCACATTTTCCACCATCAATCACTAACTCCAGCACCGTATCCACTTTCTACTGCGGTACCTAA 1392 0.5029 MLDLNLNADSASHTPPLSAAQMESSGSFNSSVVNAADTEDSCSFGDAVAYNFAILNTASAVDDAATSAALHLAGESSLRTIQLFPPAQSGDTPPGWLDFSSMDPHHRGAAAPEQRIAPRQPQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWLVNSNLLLLIFFRAYDRAAIKFRGVDADINFNVSDYDEDIKQMSNFTKDEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELEAARAYDRAAIKCNGREAVTNFEPSLYEGDMISQSDNEDSKQNLDLNLGIAPPSYTDGQIKNTPNNGSGLKVPHGWDQIPVDKRVMLEHSGSRSLPVQPPPGFSMASERHSSVWSGSNFFPICEETAIEKRMEAGPMPNWAWQVQGPYGGATLTPPFSTAASSGFPSTIIPSAADSQIHFPSMTFLHPHFPPSITNSSTVSTFYCGT 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02341 463 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 458 - -
Cca03g02341 463 SMART rav1_2 222 285 IPR001471 GO:0003700|GO:0006355
Cca03g02341 463 SMART rav1_2 136 192 IPR001471 GO:0003700|GO:0006355
Cca03g02341 463 SUPERFAMILY DNA-binding domain 135 188 IPR016177 GO:0003677
Cca03g02341 463 SUPERFAMILY DNA-binding domain 221 280 IPR016177 GO:0003677
Cca03g02341 463 MobiDBLite consensus disorder prediction 7 23 - -
Cca03g02341 463 ProSiteProfiles AP2/ERF domain profile. 222 279 IPR001471 GO:0003700|GO:0006355
Cca03g02341 463 MobiDBLite consensus disorder prediction 1 23 - -
Cca03g02341 463 MobiDBLite consensus disorder prediction 85 135 - -
Cca03g02341 463 Pfam AP2 domain 221 271 IPR001471 GO:0003700|GO:0006355
Cca03g02341 463 CDD AP2 221 281 IPR001471 GO:0003700|GO:0006355
Cca03g02341 463 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 458 - -
Cca03g02341 463 Gene3D AP2/ERF domain 221 280 IPR036955 GO:0003700|GO:0006355
Cca03g02341 463 Gene3D AP2/ERF domain 135 188 IPR036955 GO:0003700|GO:0006355
Cca03g02341 463 PRINTS Ethylene responsive element binding protein signature 261 281 IPR001471 GO:0003700|GO:0006355
Cca03g02341 463 PRINTS Ethylene responsive element binding protein signature 223 234 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02341 Cca-Chr3 44367242 44369648 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02341 116 346 AP2-EREBP Transcription Factor Family AT4G36920 62.083 2.16e-83 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca03g02341 AP2 1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02341 K09284 - gmx:100808212 715.687
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02341 03 44367242 44369648 Cca03g02341 03 44367242 44369648 ECH