Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02340 ATGGCAATGGCACCTTCAACTCCCACTAGCGGGTCTGGCAAGAAGGTTAGAAAGCCTTATACTATAACCAAGTCTAGGGAGAGCTGGTCTGAGGAAGAGCATGACAAATTTCTTGAAGCTCTTCAACTATTTGACAGAGATTGGAAGAAAATTGAAGATTTTGTTGGTTCAAAAACGGTTATCCAGATTAGGAGTCATGCCCAGAAGTATTTCTTGAAAGTTCAGAAGAATGGGACAGTAGCACATGTGCCTCCTCCTCGGCCTAAGCGCAAAGCTGCTCATCCTTACCCACAAAAGGCATCCAAAAATGTTTTGGTGCCATTGCCAGCTTCCATGGCTTATGTTTCTTCAACTGGTACCCTCCCACCCGGGTATGTCACATGGGATGAAAATTCCTTGCTCGTGAATGCTGGATCCAACAAATCTCAAGAAGAAATCAACAATCTTCATGGAAGTGAAGCTGATATTGGACCAAAGGGGACAACACGAATTGGCCACACCAGTCTTAGTGGTGTTGGGAACTCTACTAGAAAATTGCCTGCCACTGAGATGCCAAAACAAGGGAACCAGGGTCAGGTTCTTCATGGTTTGCCAGATTTTGCTGAAGTTTACAGCTTCATCGGAAGTGTTTTTGATCCAGACACAAAAGGCCATGTCCAGAAGCTGAAGGAAATGGATCCTATAAATTTTGAAACTGTTTTGTTGTTAATGAGAAACCTCACTATCAACATGTCAAATCCTGACTTTGAGCCCATTAAAAAGGCCATGTCATCATACGATGCTAATACAAAGACAGGAGTTACTGCAGGAATAGATGTCAAGAAGCAGACAAATGATGTATCATGTCAAACAGCTTGA 858 0.4289 MAMAPSTPTSGSGKKVRKPYTITKSRESWSEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAAHPYPQKASKNVLVPLPASMAYVSSTGTLPPGYVTWDENSLLVNAGSNKSQEEINNLHGSEADIGPKGTTRIGHTSLSGVGNSTRKLPATEMPKQGNQGQVLHGLPDFAEVYSFIGSVFDPDTKGHVQKLKEMDPINFETVLLLMRNLTINMSNPDFEPIKKAMSSYDANTKTGVTAGIDVKKQTNDVSCQTA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02340 285 MobiDBLite consensus disorder prediction 151 176 - -
Cca03g02340 285 Pfam Myb-like DNA-binding domain 26 71 IPR001005 -
Cca03g02340 285 ProSiteProfiles Myb-like domain profile. 21 71 IPR001005 -
Cca03g02340 285 SMART sant 25 73 IPR001005 -
Cca03g02340 285 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 24 73 IPR006447 GO:0003677
Cca03g02340 285 MobiDBLite consensus disorder prediction 1 16 - -
Cca03g02340 285 CDD SANT 28 71 IPR001005 -
Cca03g02340 285 MobiDBLite consensus disorder prediction 1 26 - -
Cca03g02340 285 SUPERFAMILY Homeodomain-like 20 76 IPR009057 -
Cca03g02340 285 PANTHER SWI/SNF COMPLEX-RELATED 3 279 - -
Cca03g02340 285 Gene3D - 29 76 - -
Cca03g02340 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 75 IPR017930 -
Cca03g02340 285 ProSiteProfiles SANT domain profile. 24 77 IPR017884 -
Cca03g02340 285 PANTHER PROTEIN REVEILLE 8 3 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02340 Cca-Chr3 44354077 44359465 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca03g02340 Myb_DNA-binding 1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02340 - - gmx:100783482 494.967