Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02335 ATGGACATGAAGGAAGCAGAAAGAGTGGTGGTTGCCAAGCCAGTAGCTTCAAGGCCTACTTGTTCTACTTTCAGATCTTTCTCAGAGCTGCTAGCTGGTGCAATCAATGCTTCTCCCACTGTTGCATCTTCTCATGCTGCAGTTTCAGCCATTAGACCCAAGACAGTGAGGTTCAAGCCTGCAGTGAATCACCCCCCTGCTGCCTTTGTATCTTCTCAGGCTGATGCTTTTGGAGCAGCACTTGGTAACTCTTCTGACAAGAGTCCTAAACTTGACACCAAGCAGTCCCTCATATACAAGCCAACGGCAAAACTGGTGTCAAAGACAACTGTGTCTCTTTTGGCAAACATGGGAAATTGCAGTACTAGTCAACAACAAACACGGCACTCAATGGAGACCAATTTTCAACATTCCATCCATGAAAAATTTAGAACCAACTCGAGCTCAATTCCTGATCAGAGTACTATCCCGCATGCAGAAATAAACCAGAGCAGTGAAGCTAGTAAGATGGTGCAGCAGAACACAGAGGAGGACCAAAAAGCTTTAACGTCCTCAGTGAATTGTGATCGACCATCTTATGATGGATATAATTGGAGGAAATATGGTCAGAAGCAAGTGAAAGGGAGCGAGTACCCTCGAAGCTATTACAAGTGCACACATCCCAATTGTCCAGTGAAAAAGAAGGTTGAAAGATCATTTGATGGCCAAATTGCAGAAATTGTTTATAAGGGTGAACACAACCATTCTAAGCCACAGATTCCTAAGCGCAACTCAGCAGGGACACAGGGATCAGGGGTGGTGTCTGATGGAATGGTTCAAGATATGTGGAGTAATAGTCACAGTGAGAGGAATGAAGGGAATGAAGGTAGAGTTGAAAACACAGGACTGTCTATGCTTTCGGATTATCATGTCAAAGTTCCACAGCCTAATGATTCTCTTCTTAACACTAATGCTGGTGGAGGAAGCATGGAAAACTCTTGCGGTCTAAGTGGGGAATGTGAGGAAGGAAGCAAGGGATTTGAGACTCAGGAGGATGATCACAGAAGTAAAAGAAGGAAAAGTGAGAATCAATCCAATGATGCAACGTTATCAGAGGAAGGTTTGGTAGAGCCGCGCATTGTGATGCAAAGTTTTACGGATTCTGAAATACTTGGAGACGGATTTCGCTGGAGAAAATATGGGCAGAAGGTGGTGAAGGGCAATCCATATCCCAGAAGTTACTATAGATGTACCAACATCAAGTGTAACGTTCGCAAACACGTGGAGAGAGCAATTGATGACCCAAGATCATTTGTGACTACATATGAGGGAAAGCACAATCATGAGATGCCACTCAAGAACACGGGAAATGCAGCCTCAGAAAGAGATTCACAGGCTTCTCTTAGTAAAGATAAACCATGA 1401 0.4404 MDMKEAERVVVAKPVASRPTCSTFRSFSELLAGAINASPTVASSHAAVSAIRPKTVRFKPAVNHPPAAFVSSQADAFGAALGNSSDKSPKLDTKQSLIYKPTAKLVSKTTVSLLANMGNCSTSQQQTRHSMETNFQHSIHEKFRTNSSSIPDQSTIPHAEINQSSEASKMVQQNTEEDQKALTSSVNCDRPSYDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSFDGQIAEIVYKGEHNHSKPQIPKRNSAGTQGSGVVSDGMVQDMWSNSHSERNEGNEGRVENTGLSMLSDYHVKVPQPNDSLLNTNAGGGSMENSCGLSGECEEGSKGFETQEDDHRSKRRKSENQSNDATLSEEGLVEPRIVMQSFTDSEILGDGFRWRKYGQKVVKGNPYPRSYYRCTNIKCNVRKHVERAIDDPRSFVTTYEGKHNHEMPLKNTGNAASERDSQASLSKDKP 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02335 466 MobiDBLite consensus disorder prediction 253 269 - -
Cca03g02335 466 PANTHER WRKY TRANSCRIPTION FACTOR 44 7 447 - -
Cca03g02335 466 MobiDBLite consensus disorder prediction 244 269 - -
Cca03g02335 466 Gene3D WRKY domain 178 252 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca03g02335 466 Gene3D WRKY domain 370 445 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca03g02335 466 ProSiteProfiles WRKY domain profile. 194 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g02335 466 SUPERFAMILY WRKY DNA-binding domain 191 251 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca03g02335 466 MobiDBLite consensus disorder prediction 436 466 - -
Cca03g02335 466 SMART WRKY_cls 384 443 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g02335 466 SMART WRKY_cls 192 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g02335 466 MobiDBLite consensus disorder prediction 307 368 - -
Cca03g02335 466 SUPERFAMILY WRKY DNA-binding domain 377 444 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca03g02335 466 MobiDBLite consensus disorder prediction 337 359 - -
Cca03g02335 466 MobiDBLite consensus disorder prediction 309 324 - -
Cca03g02335 466 ProSiteProfiles WRKY domain profile. 379 444 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g02335 466 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 7 447 IPR044810 GO:0003700
Cca03g02335 466 Pfam WRKY DNA -binding domain 386 442 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g02335 466 Pfam WRKY DNA -binding domain 194 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02335 Cca-Chr3 44306226 44309478 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02335 92 445 WRKY Transcription Factor Family AT2G37260 45.213 2.84e-88 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca03g02335 WRKY 7.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02335 - - gmx:100794069 809.675