Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02334 ATGGGTTGGATTCCCTGTTCTGGATATTCAGGCACTAAGAATAAGATTGAGAAGATGGAAGTTCAAGACAGTCTTGTTGGTCAGATCAAAGCTACCCCAGGAAAGTTGAAGAGGAATTCATCAAAAAATTCAAAAGATGCATCTAAAAATGGGAACCCTGATCACATTGCAGCACAGACATTCTCATTCCGTGAGTTGGCAACTGCAACTAGAAATTTTAGAGCTGAATGTCTTTTGGGAGAAGGAGGCTTTGGTAGAGTATACAAAGGGCGTTTGGAAAGCATTAATCAGGTTGTTGCAATTAAGCAACTTGACCGAAATGGACTGCAAGGGAATAGGGAATTCCTTGTTGAAGTGTTGATGTTAAGTCTACTTCACCATCCTAACCTTGTAAACCTTATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATATATGTCATTAGGATCCTTGGAAGACCACTTGCATGATATTCCTCCTGGCAAGAAACGACTGGACTGGAACACGCGAATGAAAATTGCTGCTGGGGCAGCAAAGGGTTTGGAATATCTTCATGATAAAGCTAATCCTCCTGTCATCTACCGCGATCTAAAGTGCTCCAACATTTTGCTTGGTGAAGGGTATCACCCTAAGTTATCTGATTTTGGTTTGGCTAAACTTGGCCCAGTTGGGGAAAACACCCATGTATCAACAAGGGTTATGGGCACCTATGGATATTGTGCTCCAGAGTATGCAATGACTGGTCAATTGACTCTAAAATCGGATGTTTATAGCTTTGGTGTAGTTCTTCTGGAAATAATTACTGGAAGGAAAGCAATTGACAATTCAAAATCAGCAGGAGAGCAGAATCTTGTTGCCTGGGCTAGACCCTTGTTTAAGGACAGAAGAAAGTTTTCACAAATGGCTGATCCAATGCTCCAAGGTCAATATCCTCCAAGAGGGCTATACCAGGCCCTTGCTGTTGCAGCAATGTGCGTTCAGGAGCAAGCTAACATGCGTCCAGTTATAGCTGATGTTGTCACAGCTTTGTCTTACCTTGCTTCACAAAGATATGATCCCAGTACACACTCAGTCCAAAGCTCTCGTCTCGCTCCTGCTACTCCTCCTAGAACCAGGAGAAGGCAATGA 1140 0.4272 MGWIPCSGYSGTKNKIEKMEVQDSLVGQIKATPGKLKRNSSKNSKDASKNGNPDHIAAQTFSFRELATATRNFRAECLLGEGGFGRVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMSLGSLEDHLHDIPPGKKRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAGEQNLVAWARPLFKDRRKFSQMADPMLQGQYPPRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLASQRYDPSTHSVQSSRLAPATPPRTRRRQ 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02334 379 Gene3D Phosphorylase Kinase; domain 1 41 149 - -
Cca03g02334 379 PANTHER OS07G0668900 PROTEIN 1 378 - -
Cca03g02334 379 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Cca03g02334 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Cca03g02334 379 ProSiteProfiles Protein kinase domain profile. 73 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02334 379 Pfam Protein tyrosine and serine/threonine kinase 77 346 IPR001245 GO:0004672|GO:0006468
Cca03g02334 379 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 1 378 - -
Cca03g02334 379 CDD STKc_IRAK 79 347 - -
Cca03g02334 379 Gene3D Transferase(Phosphotransferase) domain 1 150 367 - -
Cca03g02334 379 MobiDBLite consensus disorder prediction 360 379 - -
Cca03g02334 379 MobiDBLite consensus disorder prediction 32 55 - -
Cca03g02334 379 SMART serkin_6 73 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02334 379 SUPERFAMILY Protein kinase-like (PK-like) 56 347 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02334 Cca-Chr3 44295295 44298570 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02334 33 352 Glycoside Hydrolase AT3G07070 68.750 8.51e-166 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Cca03g02334 PK_Tyr_Ser-Thr 6.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02334 - - gmx:100818024 712.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02915 02 50661034 50665253 Cca03g02334 03 44295295 44298570 ECH
Cca03g02334 03 44295295 44298570 Cca03g02334 03 44295295 44298570 ECH
Cca03g02334 03 44295295 44298570 Cca02g00882 02 24335719 24339620 PCT