Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02329 ATGGTTAGATCCTGCTGGAAACCAGCTGCGGTGGGTGATGAAAGAGATGTGAATGGACGAGTTGAGGGGCTGCTATGGTACAAGGACTTGGGGAACCATCTTTATGGGGAATTCTCAATGGCTGTAATTCAAGCTAATAGTTCATTGGAGGATCGTAGCCAACTTGAATCTGGACCCTTGACTTCTGATTATTTGGGTCCTCAAGGAACCTTTATAGGTGTATATGATGGTCATGGTGGCACCGCGGCCTCACAGTTCGTCACTGACAATCTTTTCTGCAATCTTAAGAGTTTGGCTGCTGAGCAACAAGGCATTTCAGAGAATGTTATACGAAGGGCCTTTTCAGCAACAGAAGAGGGTTTTCTGTCTCTGGTGAAGAAACAGTGGCTGAGCAAGCCACAGATTGCATCCACGGGTACATGTTGTTTGGCGGGGATAATTTGCAATGGGATGCTGCATATTGCAAATGCAGGAGATTCAAGGGTGGTGTTGGGGAGAGTAGAGAGAGCAACAAGGGAAATATCAGCTATACAATTATCTGCCGAACACAACGTTAACATCCAAACAGAGAGAGATGAACTTCGGTTAAAGCACCCTTATGATCCACAAATCGTGGTTATGAAGCACAACGTTTGGCGTGTGAAAGGCCTGATACAGGTTTCAAGATCCATAGGTGATGCATATCTGAAGAAGGACGAATTTAACAGGGAGCCTCTACAGCAGAAGTTTAGACTACCTGAACCCTTCTTCAAGCCAATTCTTAGTCATGAACCATCAATATCAGTACATAAGCTTCGTCCTGAAGATCAATTTCTCATCTTTGCTTCAGATGGTTTATGGGAGCAACTTAGCAACCAAGAGGTTGTCAACATAGTGAGCAATAATCCACGAAATGGAATTGCTAGGCGACTTGTGAAAGCTGCACTTCGAGAAGCTGCTAGGAAGAGAGAAATGAGATTCTCGGACCTCCAAAAGATTGAACAAGGAGTGAGGAGACACTTCCACGATGATATTACAGTTATTGTTGTATTTCTAAATCCCAAACTCATTGATAATAGCTCTCTCATGGCTTCTCCTCTTTCAATCAGAGGAGCATGCTTTGCAAGTCCTTAA 1113 0.4385 MVRSCWKPAAVGDERDVNGRVEGLLWYKDLGNHLYGEFSMAVIQANSSLEDRSQLESGPLTSDYLGPQGTFIGVYDGHGGTAASQFVTDNLFCNLKSLAAEQQGISENVIRRAFSATEEGFLSLVKKQWLSKPQIASTGTCCLAGIICNGMLHIANAGDSRVVLGRVERATREISAIQLSAEHNVNIQTERDELRLKHPYDPQIVVMKHNVWRVKGLIQVSRSIGDAYLKKDEFNREPLQQKFRLPEPFFKPILSHEPSISVHKLRPEDQFLIFASDGLWEQLSNQEVVNIVSNNPRNGIARRLVKAALREAARKREMRFSDLQKIEQGVRRHFHDDITVIVVFLNPKLIDNSSLMASPLSIRGACFASP 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02329 370 PANTHER SERINE/THREONINE PHOSPHATASE FAMILY, 2C DOMAIN PROTEIN 3 366 - -
Cca03g02329 370 ProSitePatterns PPM-type phosphatase domain signature. 71 79 IPR000222 GO:0043169
Cca03g02329 370 ProSiteProfiles PPM-type phosphatase domain profile. 34 345 IPR001932 -
Cca03g02329 370 SMART PP2C_4 31 343 IPR001932 -
Cca03g02329 370 Pfam Protein phosphatase 2C 69 314 IPR001932 -
Cca03g02329 370 CDD PP2Cc 35 345 IPR001932 -
Cca03g02329 370 SUPERFAMILY PP2C-like 46 346 IPR036457 -
Cca03g02329 370 PANTHER ALPHABET, ISOFORM E-RELATED 3 366 - -
Cca03g02329 370 Gene3D - 28 354 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02329 Cca-Chr3 44273081 44275401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02329 1 365 PP2C-type Phosphatase Gene Family AT3G12620 66.576 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02329 K01102 - gmx:100815902 637.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02329 03 44273081 44275401 Cca03g02329 03 44273081 44275401 ECH
Cca03g02329 03 44273081 44275401 Cca02g00887 02 24404382 24406575 PCT