Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02309 ATGAAGAGGCAAAGAGACATGGAAGGGTTTGAGAGCATAGATTTGGCGAATTGTCTAATGCTTCTCACTCGTCCTCAACAAAGTAAACAACAAAGTTTTGAAGGTGTGGAATTTGAGTGCAAGACATGCAACCGCAAATTCTCGTCCTTTCAAGCACTTGGTGGCCATAGGGCTAGCCATAAAAGGTCGAAACTTGAGGGGGATAATGAACTCAAGTCACATGCTATCTCTCTAAGTTTGGGAAATAAACCCAAAATGCATGAGTGTTCCATTTGTGGACAGGAATTCTCATTGGGGCAGGCCTTGGGGGGCCACATGAGAAGGCATAGATCTTCCATCAACCAAGAGTTTTCTTCAATAAAACAAGTTGTTACACCACAAGTACTACCACTTCTGAAAAGATCGAATAGTACGAGGCTCATTACGTGCTTGGACTTGAACCTAACACCGTTAGAGAACGACTTGAAGTTATTGTTTGAAAAGATGCCACCAAATGCTGGTGCCTTAGTCTGA 513 0.4288 MKRQRDMEGFESIDLANCLMLLTRPQQSKQQSFEGVEFECKTCNRKFSSFQALGGHRASHKRSKLEGDNELKSHAISLSLGNKPKMHECSICGQEFSLGQALGGHMRRHRSSINQEFSSIKQVVTPQVLPLLKRSNSTRLITCLDLNLTPLENDLKLLFEKMPPNAGALV 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02309 170 Pfam C2H2-type zinc finger 38 62 - -
Cca03g02309 170 Pfam C2H2-type zinc finger 87 111 - -
Cca03g02309 170 SMART c2h2final6 38 60 IPR013087 -
Cca03g02309 170 SMART c2h2final6 87 109 IPR013087 -
Cca03g02309 170 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 161 - -
Cca03g02309 170 Gene3D Classic Zinc Finger 35 109 - -
Cca03g02309 170 SUPERFAMILY beta-beta-alpha zinc fingers 38 109 IPR036236 -
Cca03g02309 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Cca03g02309 170 PANTHER ZINC FINGER PROTEIN ZAT5 1 161 - -
Cca03g02309 170 ProSitePatterns Zinc finger C2H2 type domain signature. 89 109 IPR013087 -
Cca03g02309 170 ProSiteProfiles Zinc finger C2H2 type domain profile. 87 109 IPR013087 -
Cca03g02309 170 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02309 Cca-Chr3 44062405 44063126 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02309 1 161 C2H2 Transcription Factor Family AT2G37430 50.588 6.81e-48 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca03g02309 zf-C2H2_6 7.4e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02309 - - gmx:100527151 283.878