Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02308 ATGAAGAGACAGCGAGGTAACGAAGGGTCAGAGATCTTAGATTTGGCGAATTGTCTTATGTTATTCTCCTGCCCAGAAGAGAAAAGTTACAGGGGTGTGGAATTCGAGTGCAAGACATGCAACCGCAAGTTTTCATCTTTTCAAGCACTTGGTGGGCACAGGGCGAGTCATAAAAGGCAAAAGCTTGAAGGTGAAGAAGGACTGAAAGAAGAGGCAAAAACTCTGAAGCTATGGAACAAGCCCAAAATGCACGAGTGTTCCATTTGTGGCCTTGGATTCTCTCTGGGGCAGGCTCTGGGAGGCCACATGAGAAAACACAGAGCCACCATGAACCAAGGGTTTCCTTCTATCACTCAAGTTATTGCCAAAACTCCGGTTTTGAAGAGATCGAATAGCACCAGGGTTATGTGCTTAGACTTGGAGTTGCACCTTTAG 435 0.4621 MKRQRGNEGSEILDLANCLMLFSCPEEKSYRGVEFECKTCNRKFSSFQALGGHRASHKRQKLEGEEGLKEEAKTLKLWNKPKMHECSICGLGFSLGQALGGHMRKHRATMNQGFPSITQVIAKTPVLKRSNSTRVMCLDLELHL 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02308 144 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
Cca03g02308 144 Gene3D Classic Zinc Finger 33 106 - -
Cca03g02308 144 SUPERFAMILY beta-beta-alpha zinc fingers 35 106 IPR036236 -
Cca03g02308 144 PANTHER ZINC FINGER PROTEIN ZAT5 1 144 - -
Cca03g02308 144 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 144 - -
Cca03g02308 144 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Cca03g02308 144 SMART c2h2final6 35 57 IPR013087 -
Cca03g02308 144 SMART c2h2final6 84 106 IPR013087 -
Cca03g02308 144 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 111 IPR013087 -
Cca03g02308 144 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Cca03g02308 144 Pfam C2H2-type zinc finger 84 108 - -
Cca03g02308 144 Pfam C2H2-type zinc finger 35 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02308 Cca-Chr3 44054216 44055103 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02308 1 142 C2H2 Transcription Factor Family AT2G37430 43.871 7.11e-35 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca03g02308 zf-C2H2_6 3.1e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02308 - - ccaj:109797444 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02308 03 44054216 44055103 Cca03g02308 03 44054216 44055103 ECH