Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02302 ATGGGTCTTGATGGGCCTGCTAATAAGCATCATAAGGCTGTGTCACTAAACAATCTAAAAGGGACAACAGGGACCGCGAAAACACGAAGCAGTGGTACATTGTATGGCGGTCAATCATCTAGGAGAAGCTCAAAGCATCAGCAACAGTTTAAGGATGTGTTTGGGATCTCAGATATCCAAAAGGTACAGAGTTGTCGGCGTTCATCGCAAGGGTCTGTAGAGTTGAAGATCACGGATGCTGAAATGTCGTTTATAGAACAGAAATTCGTGGATGCCAAGCGCTGTGCAACTTATCAGGATTTACAGTCTTCTCAGGATTCCCATGATACACTTGAGATTCTAGACTCTAACAGTGATCTTCTGCAAGAATACTTTAAGCGGCCGGATTCTTTGTTTAAAAGGTACCTAGATGATCTGCATGCTGCTCCTCCCCAATCACATTTTCGTCACATTGAAGGTACAAAATCATCTGATATGGCGATGAAAGGGTTGAATTACAACAGATCTCATCAGAAGCATTATGATGATTATTCATGTCATTTTGCCAGAAGACATGTTACACATAGTTCCCCAAAATCATCAAAGTTTCCCTTTAAGGGAAGAAATGCGCCCCATGCAGTCCCAACAAGGATTGTTGTCCTGAAACCTAATCTTGGAAAAGTGCAGAATGCTACCAAAATTGGTTCATCAATTTGTTCTTCAAATACTGTCCTATCTGAGTGTGGACAACATGCTGAATTTTCAGATATCAAATATAGGGGCACTGAACTGAATCAGAGGAAAAAATTTCCTGATAATACTTGGCATTCAAGGCAAAATTCATCGGAATCAAGAGAAATTGCAAAGGAAATCACGAGCCAAATGAAAAATAGTTTGAATAATGGCTCCATGATATTTTCATCTTCTAGATTTAGAGGATATACTTGGGATGATAGCTCATGTCGTTTTTCTGGGAATGAATCTCCTGAGGAATCAGAGGTAACACCTACAACTTTAGGAAAGTCATTTGACATGAGTAAAACTTTCAGCCCATCTTCCCATTTTGGTGAATCATCTGTGAATAGGGAGGCAAAGAAGAGATTATCGGAGAGGTGGAAAATGTCTCTCAACTCTCAACAGGGCCATTCCATCTCCAGGAGCGGTACACTTGTTGAAATGCTTGCTTTCCCTGACAAGGAAATGAAAACAGCTAATTTTCACAGTATCTCTTGTGGGGAAGGTTTACGTGACAAACTTGCTAGCAATGTTAAATCTACTGGGAGGGTTGAACCATTGGGTATTAGCAGTAGggatggttggaaggatggatgtatcggaAGTTTACGAAGATCTAAGTCTCTTCCTGCATCATCTACGGCCTTTGGAAGTCCCAGAACAATTTTGCGCCATGAAGCTCTCTGTGATGATCAATTTATGATGCCAAATGAGGCCTGTAAACGGGAAAGGAGAAAAGTAGTGAAATGTCTTGATCAGAAACAGTGCATGAATACCAGAAGCTCAAAATCTGGTCACAAGAAGTCTTGGCGTTCTCATTCATCAAATATGGAAAGCCATGAATCCTCTATTAAGGAGTTATCAGATGGGTCTTCCGGTAAAAATTCTGTCCCTTTGCAAACACCTATATCAGGACTTGAATCCTCATTCTGTAAAGATGCGGATCAACCCAGTCCAGTCTCAGTACTAGAACCTTCATTTACTGATGATCTGTCATCTTGTTCAGAATGTTTTGAAACTCTGAGTGCTGACATACAAGGGCTTCGAATGCAACTCCAGTTGCTGAAGCTGGAATCTGAAGAATTTGTGGAAGGACCCATGCTAATTCAAAGTGATGAAGATGAAGGGGAAGCATCTACTGGAATTTCAGAAGACAATGGATTACGTAAGACTGGAGATAGCTGGGAGACTTCCTACATGATTGCTGTCTTGTCCAAATCTGGTATTGATAGAGCTGAGCCGTATGCATTTTTGAAAGTTTGGCATTCTCGGGAATGCCCTCTTAGTCTTTCAGTGTTTGATGAACTTGAAAAGAGGTACTCTGATTGGACTAGTTGTCCAAGGTCCGAAAGGAGATTGCTTTTTGATTGTATAAATACAGGAATTATCAATATATACGAGCAATTCATGAGTGCACAGCCATGGGTAAGCCCTACTACAACCGCAAATGTTTGTTCGAAATTAATTATAAATGGGCTCCAAGACTGTTTGTTCAGGATGCTGGGGAGCCAAGGAATAGCAAAGAATACCGAATTGGGGAAGGTGCTGGTGAGCGAATTGCAGTGGTTGAACTTAAGAGATGACATTGATGGAATAGGTAGGGAAGTTGAGAGCTTGTTGCTAGATGATCTAGTGGCAGAGATAGCCGTTACATAG 2370 0.4063 MGLDGPANKHHKAVSLNNLKGTTGTAKTRSSGTLYGGQSSRRSSKHQQQFKDVFGISDIQKVQSCRRSSQGSVELKITDAEMSFIEQKFVDAKRCATYQDLQSSQDSHDTLEILDSNSDLLQEYFKRPDSLFKRYLDDLHAAPPQSHFRHIEGTKSSDMAMKGLNYNRSHQKHYDDYSCHFARRHVTHSSPKSSKFPFKGRNAPHAVPTRIVVLKPNLGKVQNATKIGSSICSSNTVLSECGQHAEFSDIKYRGTELNQRKKFPDNTWHSRQNSSESREIAKEITSQMKNSLNNGSMIFSSSRFRGYTWDDSSCRFSGNESPEESEVTPTTLGKSFDMSKTFSPSSHFGESSVNREAKKRLSERWKMSLNSQQGHSISRSGTLVEMLAFPDKEMKTANFHSISCGEGLRDKLASNVKSTGRVEPLGISSRDGWKDGCIGSLRRSKSLPASSTAFGSPRTILRHEALCDDQFMMPNEACKRERRKVVKCLDQKQCMNTRSSKSGHKKSWRSHSSNMESHESSIKELSDGSSGKNSVPLQTPISGLESSFCKDADQPSPVSVLEPSFTDDLSSCSECFETLSADIQGLRMQLQLLKLESEEFVEGPMLIQSDEDEGEASTGISEDNGLRKTGDSWETSYMIAVLSKSGIDRAEPYAFLKVWHSRECPLSLSVFDELEKRYSDWTSCPRSERRLLFDCINTGIINIYEQFMSAQPWVSPTTTANVCSKLIINGLQDCLFRMLGSQGIAKNTELGKVLVSELQWLNLRDDIDGIGREVESLLLDDLVAEIAVT 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02302 789 Coils Coil 576 596 - -
Cca03g02302 789 MobiDBLite consensus disorder prediction 1 47 - -
Cca03g02302 789 MobiDBLite consensus disorder prediction 497 536 - -
Cca03g02302 789 PANTHER AFADIN 1 522 - -
Cca03g02302 789 PANTHER AFADIN 521 787 - -
Cca03g02302 789 MobiDBLite consensus disorder prediction 317 336 - -
Cca03g02302 789 Pfam Protein of unknown function (DUF3741) 86 130 IPR022212 -
Cca03g02302 789 MobiDBLite consensus disorder prediction 15 47 - -
Cca03g02302 789 MobiDBLite consensus disorder prediction 509 525 - -
Cca03g02302 789 Pfam Domain of unknown function (DUF4378) 635 785 IPR025486 -
Cca03g02302 789 PANTHER AFADIN 1 522 - -
Cca03g02302 789 PANTHER AFADIN 521 787 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02302 Cca-Chr3 43982797 43988425 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02302 533 788 TRM (TON1 Recruiting Motif) Superfamily AT3G53540 43.243 1.73e-48 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02302 - - ccaj:109796381 1562.36