Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02296 ATGGCTTTTCTGTCTGGAGTTCAGCGTCTGCTTCGGCACTCACCTCTTCTTCATTCCCACTATGCTTCCTTTCGTCTCAGCTCAACTCTCACTTCCCCTAAACTTTTCGTCAGCGGTCTTTCTAGATTGACAACAGATGAAAAACTTAAGGAAGCGTTTTCTTCTTTTGGTCAGCTGGTTGAAGCTAAGGTGATAACTGATAGAGCCTCTGGAAGATCAAAGGGATTTGCTTTTGTAACTTACACAACCGTAGAAGAAGCTGAAAAGGCAAGAGAAGGAATGAATGCTAAATTTTTGGATGGGTGGGTTATATTTGTTGATCCTGCCAAACCAAGAGAACCCAGACCTCCTTCGCAATCACAGTCTCAACCCTCTGAAACAGGTCTCACTGTTAACAAAACAGTTGGGTGGTGTGGTTAA 420 0.4357 MAFLSGVQRLLRHSPLLHSHYASFRLSSTLTSPKLFVSGLSRLTTDEKLKEAFSSFGQLVEAKVITDRASGRSKGFAFVTYTTVEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPSQSQSQPSETGLTVNKTVGWCG 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02296 139 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 139 - -
Cca03g02296 139 SMART rrm1_1 34 107 IPR000504 GO:0003723
Cca03g02296 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 101 IPR000504 GO:0003723
Cca03g02296 139 PANTHER NUCLEOLAR PROTEIN 8 1 139 - -
Cca03g02296 139 SUPERFAMILY RNA-binding domain, RBD 32 126 IPR035979 GO:0003676
Cca03g02296 139 MobiDBLite consensus disorder prediction 110 139 - -
Cca03g02296 139 Gene3D - 25 131 IPR012677 -
Cca03g02296 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02296 Cca-Chr3 43897153 43899515 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02296 35 115 Eukaryotic Initiation Factors Gene Family AT3G16380 39.506 8.51e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02296 - - gmx:100306326 235.343