Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02293 ATGACGTCGTTCTTGAAGCCTGAGAATGCTCTTAAAAGAGCGGAAGAATTAATCAATGTTGGGCAGAAGCAGGATGCTTTGCAGACACTTCATGACCTCATTACTTCGAAGAGATACAGAGCATGGCAGAAGACACTTGAAAGGATTATGTTCAAGTATGTAGAACTGTGTGTAGACATGCGCAAAGGACGGTTTGCAAAAGATGGGCTCATTCAGTACAGGATCATATGTCAGCAAGTGAATGTTAGTTCGCTGGAAGAGGTTATCAAGCATTTCATGCACCTTTCAACTGAAAAGGCTGAACAAGCTCGTAGCCAGGCTCAGGCGTTAGAAGAAGCCCTTGATGTTGATGATTTAGAGGCAGATAAAAGGCCAGAGGACCTCATGTTGAGCTATGTCAGTGGTGAGAAAGGAAAAGACAGATCTGATAGGGAGCTTGTCACTCCATGGTTTAAATTTCTTTGGGAAACATACAGAACAGTGCTTGAAATATTGCGGAACAACTCAAAACTGGAAGCCTTATATGCTATGACAGCTCACCGAGCTTTCCAGTTCTGTAAGCAATATAAACGAACAACAGAGTTCCGCAGACTGTGTGAAATCATAAGAAACCATTTGGCCAATCTGAATAAATACCGTGACCAACGAGATCGTCCTGATCTTTCAGCTCCTGAAAGCTTGCAGCTATATCTTGATACAAGATTTGAGCAGCTGAAAATTGCCACTGAACTTGAACTCTGGCAGGAAGCCTTCAGATCAGTGGAGGATATACATGGACTGATGTGCATGGTCAAGAAAACGCCCAAACCATCTTTGATGGTTGTCTACTATGTGAAGCTGACAGAAATATTTTGGATCTCATCCAGTCATCTTTATCATGCATATGCATGGTTCAGGCTCTTTTTGTTACAAAAAAGCTTCAATAAGAATCTGAGTCAGAAGGATTTGCAATTAATAGCTTCATCTGTTGTTCTGGCTGCACTTTCAGTGCCTCCTCATGATCGCACCTATGGTGCATCTCATTTGGAACTGGAGCATGAAAAAGAGAGAAATTTGAGGATGGCTAATCTTATTGGCTTTAATCTTGAAACTAAACCTGAAAGCAGAGAAATGCTCTCAAGGTCATCACTTCTTGCTGAACTGGCATCGAAGGGGGTGATGTCTTGTGTAACTCAGGAAGTGAAGGACATTTATCATCTTTTGGAACATGAATTTTATCCCTCAGATCTTGCATTAAAAGCGCTGCCCTTGTTAACTAAAATCTCAAAGTTAGGAGGCAAGCTTTCTTCTGCTTCATCTGTTCCAGAGGTGCAATTGTCTCAGTATGTCCCATCATTGGAAAGGCTAGCTACCATGAGGTTGCTGCAGCAGGTGTCTAATGTGTACCAGACAATGAAGATTGAGACCTTATCCGGAATGATTCCCTTCTTTGATTTTTCTGTAGTGGAAAAGATTTCTGTGGATGCTGTTAAGCAGAAGTTTGTATCAATGAAAGTTGATCACATGAAAAATGTTGTGATTTTTTGCAAGACGAGTCTTGAGTCTGATGGCTTAAGGGATCACTTGGCCAATTTTGCTGAACAATTAAATAAAGCAAGACAAATGATTTATCCTCCTGATAAGAAACCGTCAAAACTTGGAGCTTTACTTCCAACTTTGACAGAAGTTGTGGCCAAAGAACACAAGAGGCTTCTTGCTAGAAAATCAATCATTGAGAAGAGGAAAGAAGAACAAGAACGACAGCTTCTTGAAATGGAACGGGAGGAGGAGTCAAAAAGGCTAAGACTCCAGAAAATAACTGAAGAAGCCGAACAAAGACGGCTTGCCACTGAGTATGAGCAGAGGAAAAATCAGAGGATTCTCAGGGAGATAGAGGAAAGAGAAAATGAAGAAGCTCAAGCTTTACTCCAGGAAGCTGAAAAGCGTATCAAAAAGAAGGGGAAAAAGCCAATCATTGAGGGGGAAAAAATTACCAAACAGACCTTGATGGAGTTGACTTTAACTGAACAACTCCGCGAAAGGCAGGAAATGGAAAAGAAACTGCAGAAGTTAGCAAAAACCATGGATTATTTGGAAAGGGCAAAAAGAGAAGAGGCTGCTCCGCTGATTGAAGCTGCATATCAACAGCGTCTAGTGGAAGAGAGACTTCTTCATGAGCGTGAGCAACAGCAAGAGGTTGAAGTGAGCAAACAAAGGCACGAGGGAGATCTCAAGGAGAAGGAGAGGCTTATTCGAATGATGGGCAATAAGGAGATATATCAAGAGAGAGTTGTGAGTCACCGGCAAGCAGAGTTTGACAGATTGAGAAGAGAACGAGAGGAGAGAATCTCTAGGATTTTACAGTCCAGGAGACAGGAGAGGGAAAAAATGAGGAAGTTTAAGTATTATCTCAAGTTAGAAGAAGAGAGACAACAAAAATTGCGTGAGGAGGAGGAAGCCCGGAAGCGGGAAGAGGCTGAAAGGAAAAAGAAGGAAGAGACCGAACGCTTAGCAAAATTGGCTGAGATAGCTGAAAAACAGAGGCAAAGAGAGAGGGAACTTGAGGAAAAGGAGAGACAAAGGAGAGAAGCATTGTTGGGCAGAGCTGCGGAACCAGCTCCTCCTGCCCGTCCATTGGAATCGGGATctgctgctgctgccgcccccgctgctgctgctgctgctgccgcagctCCAAATCCAGGGAAATACGTCCCTAAGTTCAGGCGAGAGAGAACTGAAAGCACAGGAGCTGCTCCTCCCCCTGAAACAGACCGCTGGAGTAACAGCAGGCCAGATGGTGGGTGGCGTGGTGATGATCGTAGAACCTCGTTTGGTTCTGGTGGGGGTTCAAGGTCATCTTCTACTTGGTCATCTTCTAGGAATGCCCGTTGA 2874 0.4248 MTSFLKPENALKRAEELINVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKIATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISSSHLYHAYAWFRLFLLQKSFNKNLSQKDLQLIASSVVLAALSVPPHDRTYGASHLELEHEKERNLRMANLIGFNLETKPESREMLSRSSLLAELASKGVMSCVTQEVKDIYHLLEHEFYPSDLALKALPLLTKISKLGGKLSSASSVPEVQLSQYVPSLERLATMRLLQQVSNVYQTMKIETLSGMIPFFDFSVVEKISVDAVKQKFVSMKVDHMKNVVIFCKTSLESDGLRDHLANFAEQLNKARQMIYPPDKKPSKLGALLPTLTEVVAKEHKRLLARKSIIEKRKEEQERQLLEMEREEESKRLRLQKITEEAEQRRLATEYEQRKNQRILREIEERENEEAQALLQEAEKRIKKKGKKPIIEGEKITKQTLMELTLTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQQRLVEERLLHEREQQQEVEVSKQRHEGDLKEKERLIRMMGNKEIYQERVVSHRQAEFDRLRREREERISRILQSRRQEREKMRKFKYYLKLEEERQQKLREEEEARKREEAERKKKEETERLAKLAEIAEKQRQRERELEEKERQRREALLGRAAEPAPPARPLESGSAAAAAPAAAAAAAAAPNPGKYVPKFRRERTESTGAAPPPETDRWSNSRPDGGWRGDDRRTSFGSGGGSRSSSTWSSSRNAR 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02293 957 Gene3D - 269 342 - -
Cca03g02293 957 Gene3D - 352 510 - -
Cca03g02293 957 Pfam PCI domain 373 508 IPR000717 -
Cca03g02293 957 Gene3D UVR domain 217 268 - -
Cca03g02293 957 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 907 IPR027512 GO:0005852
Cca03g02293 957 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 - -
Cca03g02293 957 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 1 907 - -
Cca03g02293 957 MobiDBLite consensus disorder prediction 806 957 - -
Cca03g02293 957 Coils Coil 615 649 - -
Cca03g02293 957 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Cca03g02293 957 Coils Coil 796 856 - -
Cca03g02293 957 MobiDBLite consensus disorder prediction 806 859 - -
Cca03g02293 957 Coils Coil 667 697 - -
Cca03g02293 957 MobiDBLite consensus disorder prediction 939 957 - -
Cca03g02293 957 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 957 IPR027512 GO:0005852
Cca03g02293 957 Coils Coil 561 602 - -
Cca03g02293 957 Coils Coil 93 120 - -
Cca03g02293 957 SMART PINT_4 441 532 IPR000717 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02293 1 954 Eukaryotic Initiation Factors Gene Family AT4G11420 74.217 0.0 1335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02293 K03254 - gmx:100782598 1420.99