Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02290 ATGGCGGCGTCGCGGCGGCTCCGGGACCTCCAATCCCAAGCGGCGAACAAGATCTGCGTCGATTGTTCCCAAAAAAACCCGCAATGGGCGTCGGTATCCTACGGCGTGTTCATGTGCTTAGAGTGCTCCGGCAAGCACCGGGGCCTCGGCGTCCACATCTCCTTCGTGCGATCCGTCACCATGGACTCCTGGTCCGAAATCCAGATCAAGAAGATGGAAGCAGGAGGCAACGACAAACTCAACGCGTTCCTCACACAATATGGCATCCCCAAGGAGACCGACATCGTCGCCAAGTACAACTCCAACGCCGCCGCCGTCTACCGCGACCGGATTCAGGCCATCGCCGACGGCCGCCCCTGGCGGGATCCCCCCGTCGTCAAGGAGGCCGTCCGCTCCGCCTCCAAGGGCAAGCCGCCGCTCTCCAACAACAACGGCGGATGGGATAATTGGGACAACGACGACGGATTTGGATCCGCCAGGAACTCCGATTTGCGCCGGAATCAATCCACCGGCGATGTCCGGGGGTTCGGCGGCGGCAGCCATGTCGCGAGGTCGAAGTCGACCGAGGATATTTACACGCGGTCGCAGCTGGAGGCCTCTGCTGCGAACAAGGAAGGGTTCTTCGCGAGGAAGATGGCGGAGAATGAGTCGCGGCCGGAGGGGCTTCCGCCGTCGCAGGGTGGCAAGTACGTTGGATTCGGATCCAGCCCTGCCCCGACCCAGAGGAATATGAATCAGCAAAACGATTATTTCTCTGTCGTTTCTCAGGGGATTGGTAAATTATCGTTGGCGGCTGCTTCTGCGGCTCAATCTGCTGCTAATGTTGTTCAGGCTGGGACTAAAGAGATCACTGCTAAGGTAAAAGATGGTGGTTATGATTACAAGGTCAATGAAACTGTCAATGTTGTCTCTCAGAAGACATCAGAGATTGGACAAAGGACATGGGGTATAATGAGAGGGGTCATGGCAATGGCTACACAAAAGGTTGAGGAATACACTAGAGATAACCCAAATTGGCCATCTGATAACCGGCAACAAAATGAAAATGATAAAAACGGTTTCTATCATGAGTTCAATCAAGAGAATAAAGGCTGGAATTCTTCCACCAGAGAAGGGCAGTATTCTTCAGGTGGACAAACTAATACTTATCAATCAAGTTCTTGGGATGATTGGGACCATAAAGGTTCTAGGAAGGAAGAACCAACTAAAGGATCAGCTCCCCAATCATCAGGTGGGAAGTTTGATACTTATAACTCAAGCTCTTGGGATGATTGGGGCAATGAAGATTCGAGGAAGAAAGAACCAGCGAAAGGGTCAGCTGCCCATAGCAGTGATGGTTGGGCTGGATGGGATAATGCCAAAGATGATGGATTTGATGATATGTATGGGAGTGCATCTAATAATAAAGCTGTTGGTCATAATGATAAGTCGGGTGCTGCCTGGACAGGAGGAGGCTTTCTCTAA 1464 0.5246 MAASRRLRDLQSQAANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDKLNAFLTQYGIPKETDIVAKYNSNAAAVYRDRIQAIADGRPWRDPPVVKEAVRSASKGKPPLSNNNGGWDNWDNDDGFGSARNSDLRRNQSTGDVRGFGGGSHVARSKSTEDIYTRSQLEASAANKEGFFARKMAENESRPEGLPPSQGGKYVGFGSSPAPTQRNMNQQNDYFSVVSQGIGKLSLAAASAAQSAANVVQAGTKEITAKVKDGGYDYKVNETVNVVSQKTSEIGQRTWGIMRGVMAMATQKVEEYTRDNPNWPSDNRQQNENDKNGFYHEFNQENKGWNSSTREGQYSSGGQTNTYQSSSWDDWDHKGSRKEEPTKGSAPQSSGGKFDTYNSSSWDDWGNEDSRKKEPAKGSAAHSSDGWAGWDNAKDDGFDDMYGSASNNKAVGHNDKSGAAWTGGGFL 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02290 487 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 406 487 - -
Cca03g02290 487 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 410 - -
Cca03g02290 487 MobiDBLite consensus disorder prediction 131 183 - -
Cca03g02290 487 CDD ArfGap_ArfGap1 3 117 - -
Cca03g02290 487 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Cca03g02290 487 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Cca03g02290 487 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Cca03g02290 487 MobiDBLite consensus disorder prediction 333 487 - -
Cca03g02290 487 SMART arf_gap_3 1 120 IPR001164 GO:0005096
Cca03g02290 487 SUPERFAMILY ArfGap/RecO-like zinc finger 5 112 IPR037278 -
Cca03g02290 487 MobiDBLite consensus disorder prediction 402 424 - -
Cca03g02290 487 MobiDBLite consensus disorder prediction 214 244 - -
Cca03g02290 487 MobiDBLite consensus disorder prediction 333 348 - -
Cca03g02290 487 MobiDBLite consensus disorder prediction 425 439 - -
Cca03g02290 487 MobiDBLite consensus disorder prediction 359 389 - -
Cca03g02290 487 Pfam Putative GTPase activating protein for Arf 5 107 IPR001164 GO:0005096
Cca03g02290 487 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 410 IPR044519 GO:0005096|GO:0016192
Cca03g02290 487 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 406 487 IPR044519 GO:0005096|GO:0016192
Cca03g02290 487 Gene3D Arf GTPase activating protein 1 126 IPR038508 -
Cca03g02290 487 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 110 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02290 Cca-Chr3 43844396 43849190 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02290 5 91 C2H2 Transcription Factor Family AT4G21160 48.864 4.45e-22 95.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02290 03 43844396 43849190 Cca03g02290 03 43844396 43849190 ECH