Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02288 ATGGTGTTGAACATAACATCCATAAAGACATCCTCGAATGGAGTGTGGGAAGGTGACAATCCTTTGGACTATGCCTTCCCACTGTTAACAGTCCAAATCATATTGGTTGTCGCCCTCAGCCGCTCCCTCGCTTTCCTCCTCAAACCTCTCCGACAACCCAAAGTCATCGCTGAGATTCTCGGTGGAGTGTTGCTGGGCCCATCGGCACTGGGAAGAAACAAAAAGTATCTGCACCGTATATTCCCTTCATGGAGCACGCCAACGCTCGAATCAGTCGCCACCATAGGGCTTCTCTTTTTCCTCTTCCTCGTCGGTCTCGAGCTCGACCTCCGCGCCATTCGCCGCTCCGGCTCAAGAGCCTTCACCATCGCCGCCGTCGGAATCTCCCTCCCATTCGTCTGCGGCATCGGCGTCGCCCTCCTCCTCCGCAAAACCCTCCCCGGCGCCGACCAAGCCGCCTTCGCGCAGTTCCTAGTCTTCATGGGAGTCGCGCTTTCCATCACCGCCTTCCCTGTGCTCGCCCGCATCTTAGCGGAGCTCAAGCTCCTCACCACGCGCGTCGGGGAGACCGCCATGGCCGCCGCCGCCTTCAACGACGTCGCCGCGTGGATCCTCCTCGCCCTCGCCGTCGCCCTCGCCGgcggaagcggaagcggaagcggaagcAACAGCAGCAGCAAGAGCCCTCTGGTGTCGCTCTGGGTTCTTCTCTCCGGCGTTGGGTTTGTGGTGTTCATGATGGTCGTCGTTCGACCATTGATGAAGGTGGTTGCGCGGAGAGGCGAAAACGAAAACGAAAACGAGGCCGTTGGCGAGGTTTACGTGTGTTTGACTCTGGCGGGGGTTTTGGTGTCGGGATTCGTGACGGATTTCATTGGGATCCACGCCATATTCGGGGCGTTTGTGTTTGGGTTAACTGTTCCGAAGGAGGGGAACATGGCGAAGAGGTTGGTGGAGAGGATCGAGGATTTTGTCTTGGGTTTGTTGTTACCTCTCTACTTTGCTTCTAGCGGGTTGAAAACGGACGTAACTAGCATACGTGGCGCTTCCGCATGGGGGCTTCTGGTTGTCGTGATATTCACGGCCTGTGCTGGGAAAATTCTAGGCACCTTCGTTGTGGCCATGTTCTGCATGATACCCGTTAGGGAATCGCTCACACTTGGCGTCCTCATGAACACCAAAGGCCTTGTAGAGCTTATCGTCCTCAACATTGGAAAAGAAAAAAAGGTTTTGAACGATGAAATATTTGCAATCCTAGTCCTGATGGCTCTATTCACCACCTTCATGACAACTCCAATAGTGATGGCCGTGTACAAACCAGCTGGTGGCACCCCAGTGAAGAGCCAGCGAAAGCTAGGAGCCAACAAAATGGGCAATGAGTTCCGAGTGTTGGCCTGCATCCACGGCCCAAACAACATCCCTTCTATCATAAGTTTAATCGAATCAACTCGCGGCACGAGCAAGTCCTTGATAAAGTTGTTCCTGATGCACCTCGTTGAGCTCTCAGAGCGCTCATCCTCCATCATGATGGTCCAACGCGCTCGTAAGAACGGTTTCCCTTTCTTCAACCGCCGCAACCGCCACCTCGACCTCGCTGGAGCCTTTCCAAAGGGCCAAGTCAAAGTCCGGTCAACCACCGCTATCTCCTCTCTCTCCACCATGCACGAGGACATTTGCCACGTGGCAGAGGAAAAGAGGGTCACCATCATCATCTTGCCCTTTCACAAACACTGGCGCTTAGAAGCGGATGAGGATTGCGAGAACGATAACCGCCGTCGCGTATTGGAGAACGTGGGCCACGAATGGAGAGTGGTCAACCAAAAGGTGCTTAAAAAGGCTCCTTGCTCGGTCGCAGTGTTAGTGGACCGTGGCAATTTAACTCAGACTGCAAGCCCAATTGCCGCACTGGCCCAACGAGTGTGCATCATCTTCTTTGGTGGGCCCGATGATCGCGAGGCTCTAGAATTAGGGGAGATGATGCTTCAACACCCAACAGTTGAAGTACGTGTTGTAAGGTTCGTTCAAAAGGATGGGCTGAATGGAAACGAATCAAATGACATTGTGTTAAGCTTCTCAAATGACAATAACAGTGACAAAAGTTACAGCTTCTCCACTGCTAACATGAACCGTCAGACAGAACAGGAGTTGGATGAGGCGGCCATAGCAAAGTTTAGAAGCAAATTGAATGAGAAGGTGGAATATATTGAGAAGGTTAGTGAGAACATTGTGGAACAAGTAGTAGCAATAGGGAAAAGTGGGGATTATGATGTTATAGTAGTTGGGAAGGGTCGATTTCTGTCGAATATGGTGGCTGGATTGGCGAAAAGGCAAGCAGAGCACGCAGAGTTAGGACCTATTGGGGATGTTCTAACGTCGTCGGAACACGATGAGGTGACTTCATCAATATTGATTATTCAGCAACATGATGTAACAATAGTAGATGATGCTCCCATACACGAGGTGCATAATGAGGACGACAAGGTCAACGATAATGATTCATCCCATAGGGTAGCAATTTCAATAACAAACAACAAAATAGTGTAA 2544 0.5106 MVLNITSIKTSSNGVWEGDNPLDYAFPLLTVQIILVVALSRSLAFLLKPLRQPKVIAEILGGVLLGPSALGRNKKYLHRIFPSWSTPTLESVATIGLLFFLFLVGLELDLRAIRRSGSRAFTIAAVGISLPFVCGIGVALLLRKTLPGADQAAFAQFLVFMGVALSITAFPVLARILAELKLLTTRVGETAMAAAAFNDVAAWILLALAVALAGGSGSGSGSNSSSKSPLVSLWVLLSGVGFVVFMMVVVRPLMKVVARRGENENENEAVGEVYVCLTLAGVLVSGFVTDFIGIHAIFGAFVFGLTVPKEGNMAKRLVERIEDFVLGLLLPLYFASSGLKTDVTSIRGASAWGLLVVVIFTACAGKILGTFVVAMFCMIPVRESLTLGVLMNTKGLVELIVLNIGKEKKVLNDEIFAILVLMALFTTFMTTPIVMAVYKPAGGTPVKSQRKLGANKMGNEFRVLACIHGPNNIPSIISLIESTRGTSKSLIKLFLMHLVELSERSSSIMMVQRARKNGFPFFNRRNRHLDLAGAFPKGQVKVRSTTAISSLSTMHEDICHVAEEKRVTIIILPFHKHWRLEADEDCENDNRRRVLENVGHEWRVVNQKVLKKAPCSVAVLVDRGNLTQTASPIAALAQRVCIIFFGGPDDREALELGEMMLQHPTVEVRVVRFVQKDGLNGNESNDIVLSFSNDNNSDKSYSFSTANMNRQTEQELDEAAIAKFRSKLNEKVEYIEKVSENIVEQVVAIGKSGDYDVIVVGKGRFLSNMVAGLAKRQAEHAELGPIGDVLTSSEHDEVTSSILIIQQHDVTIVDDAPIHEVHNEDDKVNDNDSSHRVAISITNNKIV 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02288 847 PANTHER CATION/H + ANTIPORTER 3 817 - -
Cca03g02288 847 Gene3D - 493 784 - -
Cca03g02288 847 PANTHER BNAC06G14930D PROTEIN 3 817 - -
Cca03g02288 847 Pfam Sodium/hydrogen exchanger family 34 434 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Cca03g02288 847 Gene3D - 28 441 IPR038770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02288 Cca-Chr3 43830715 43835747 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02288 76 834 Antiporter Super Family AT3G53720 59.949 0.0 838
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02288 - - gmx:100798644 1191.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02288 03 43830715 43835747 Cca03g02288 03 43830715 43835747 ECH