Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02284 atggccggaaaaggagagggtcccgctatcggtattgatctcggaaccacgtactcttgcgtcggtgtctggcaacatgaccgcgtcgaaatcatcgccaacgaccaaggtaacagaacgacgccgtcttacgtcggtttcactgattccgagcgtctcatcggtgatgcggcaaagaatcaagtcgctatgaacccgatcaacaccgtcttcgATgccaagaggttgattggtcgtagattcactgatgcctctgttcagagtgatattaaattgtggccttttaaggtcattcctggtgttgctgataagccaactattgtagtgaactacaagggtgaggagaagcaatttgcagctgaagaaatctcttctatggtgctcatgaagatgCGTGAGATTGCCGAGGCTTACCTTGGCTCTGCGGTGAAGAATGCTGTTGTTACTGTGCCTGCTTACTTCAATGATTCACAGCGTCAAGCCACTAAGGATGCTGGTGTTATTGCTGGTCTTAATGTCATGCGAATTATCAATGAGCCTACTGCTGCTGCCATTGCATATGGTCTTGACAAGAAGGCTACAAGTGTTGGTGAGAAGAATGTGTTGATCTTTGATCTTGGTGGTGGGACATTTGATGTTTCTTTACTCACCATTGAGGAGGGTATCTTTGAGGTGAAAGCCACAGCTGGAGACACCCATCTTGGAGGAGAGGATTTTGATAATAGGATGGTGAACCACTTTGTTCAAGAGTTTAAGAGAAAGAACAAGAAGGACATTAGTGGAAACCCCAGAGCACTAAGAAGGTTGAGGACTGCTTGTGAGAGAGCAAAGAGAACTCTGTCATCCACTGCCCAGACAACCATTGAAATTGATTCTTTATACGAGGGAATTGATTTCTACTCCACCATCACTCGAGCCAGATTTGAGGAGCTCAACATGGATCTCTTTAGGAAATGTATGGAACCAGTGGAGAAATGTTTAAGGGATGCCAAGATGGACAAAAGAAGTGTTGATGATGTTGTCCTTGTTGGTGGTTCTACCAGAATTCCCAAGGTTCAACAATTACTGCAGGACTTCTTTAATGGAAAGGAGCTATGCAAGAGCATTAATCCTGATGAGGCTGTTGCATATGGTGCTGCTGTTCAGGCTGCAATTCTAAGTGGTGAGGGCAATGAGAAGGTTCAAGATCTTCTCCTCCTAGATGTCACCCCTCTGTCTCTTGGTTTGGAGACTGCTGGAGGTGTGATGACTGTCCTGATCGCTAGGAACACTACAATTCCAACAAAGAAGGAACAGGTTTTCTCAACATACTCCGACAACCAGCCCGGTGTGTTGATCCAGGTCTTTGAAGGTGAGAGAGCGAGGACCAGAGATAACAATTTGTTGGGCAAATTTGAACTTTCTGGCATTCCTCCTGCTCCCAGGGGTGTTCCACAGATTACAGTGTGCTTTGACATTGATGCCAATGGTATCTTGAATGTCTCTGCCGAAGATAAAACCACTGGCCAGAAGAATAAGATCACTATCACTAATGACAAGGGTAGACTGTCAAAGGAAGATATTGAGAAGATGGTTCAAGAGGCTGAGAAGTACAAATCCGAGGATGAGGAGCATAAGAAGAAGGTTGAAGCCAAGAACGCCTTGGAGAACTATGCTTACAATATGAGGAACACTATAAAAGATGACAAGATTGGTGGAAAACTCGATCCAGCTGACAAGAAAAAGATTGAGGACGCAATTGAGCAAGCTATCCAGTGGCTAGACAGCAACCAGCTTGCAGAGGCGGATGAGTTTGAGGACAAAATGAAGGAATTGGAAAGCATCTGCAATCCCATCATTGCTAAGATGTACCAGGGTGGTGCTGGTCCAGACATGGGTGGGGCTGGTGCACCGGACGAAGATTATGCTGCTCCTTCTGGTGGAAGTGGTGCTGGCCCTAAGATCGAGGAAGTCGACTAA 1959 0.3629 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFTDASVQSDIKLWPFKVIPGVADKPTIVVNYKGEEKQFAAEEISSMVLMKMREIAEAYLGSAVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFYSTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKRSVDDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIARNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEDIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDDKIGGKLDPADKKKIEDAIEQAIQWLDSNQLAEADEFEDKMKELESICNPIIAKMYQGGAGPDMGGAGAPDEDYAAPSGGSGAGPKIEEVD 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02284 652 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Cca03g02284 652 Gene3D - 10 384 - -
Cca03g02284 652 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Cca03g02284 652 Gene3D - 546 619 IPR029048 -
Cca03g02284 652 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 545 IPR029047 -
Cca03g02284 652 MobiDBLite consensus disorder prediction 619 652 - -
Cca03g02284 652 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 624 IPR029048 -
Cca03g02284 652 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Cca03g02284 652 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
Cca03g02284 652 Coils Coil 521 541 - -
Cca03g02284 652 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Cca03g02284 652 Gene3D - 71 126 - -
Cca03g02284 652 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524|GO:0140662
Cca03g02284 652 Gene3D - 192 366 - -
Cca03g02284 652 PANTHER HEAT SHOCK PROTEIN 70KDA 1 628 IPR013126 GO:0005524|GO:0140662
Cca03g02284 652 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Cca03g02284 652 PRINTS 70kDa heat shock protein signature 8 21 - -
Cca03g02284 652 PRINTS 70kDa heat shock protein signature 36 48 - -
Cca03g02284 652 PRINTS 70kDa heat shock protein signature 58 66 - -
Cca03g02284 652 PRINTS 70kDa heat shock protein signature 146 166 - -
Cca03g02284 652 PRINTS 70kDa heat shock protein signature 209 219 - -
Cca03g02284 652 PRINTS 70kDa heat shock protein signature 337 353 - -
Cca03g02284 652 PRINTS 70kDa heat shock protein signature 369 389 - -
Cca03g02284 652 PRINTS 70kDa heat shock protein signature 396 415 - -
Cca03g02284 652 PRINTS 70kDa heat shock protein signature 477 493 - -
Cca03g02284 652 Gene3D Actin; Chain A, domain 4 235 318 - -
Cca03g02284 652 PANTHER HEAT SHOCK COGNATE 70 KDA PROTEIN 2-LIKE 1 628 - -
Cca03g02284 652 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02284 Cca-Chr3 43791487 43795024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02284 1 652 Calmodulin-binding Proteins AT3G12580 91.718 0.0 1216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02284 K03283 - gmx:100798307 1232.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g00934 02 25287548 25291288 Cca03g02284 03 43791487 43795024 ECH
Cca03g02284 03 43791487 43795024 Cca03g02284 03 43791487 43795024 ECH
Cca04g00655 04 6460817 6464164 Cca03g02284 03 43791487 43795024 ECH
Cca03g02284 03 43791487 43795024 Cca04g00655 04 6460817 6464164 ECH
Cca03g02284 03 43791487 43795024 Cca02g00934 02 25287548 25291288 PCT