Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02280 ATGGAAGACGATCCAACTCTCAAGCCTTCAGGCCTACCTCGCCAAAACAAACCCTCCATCTCCATTGCAGATGACCAAATCATGGAGCTCCTATGGCAAAACGGCCAGGTCGTCATGCACAGCCAGAACCACCGTTCTCTCCGGAAACCACCGCTCCAAAACTACAATCCACACCTCTTCATGCAAGAAGGCCAAATGCCGTCCTGGCTTCACTATCCAATCGACGACGTTCATCCTCCCTTCGAGTTCGACCAAACCTTCTGCGCCGATTTCCTCCACTCGCCGCCCACCGTTAACAACAACACCGCCATGCAAACCCTAGGCCCTTCGTCTCACCTCACCGACCTCCGCCCCCCGCCGTCTCCTCGGCCTCCGATTCCGCCGCCGAGGAGGCCGGACCCGGAGACGCAGAACTTCGCGTACTTCTCCAGGCACAGTGCGAGAGCCGAGCCCAGCGTGAAGACCGCCGCGAGGGAATCCACGGTCGTGGATTCGTGCGACACGGCGGCCGCGGCTTCGAGAGTTTCCAGCGCGGCGGAAGGAGCCGGCGGCGTCGCGGCGCCTTCGACGATGATGTGCGACGTGACGATGACGACGTCGGGCGGTTCGAGTAGCAGCGGCGAACCGGTTCaggtggcggcggcggaggagcggaagcggaagggccgggaggcggcggcggaggAATGGGAGTGTCAGAGCGAGGATGTTGATTTTGAATCGGAAGCAAAGAAACAAGCTCGTGGATCAACGTCTACAAAGAGATCACGTGCCGCAGAGGTCCATAATCTCTCTGAGAGGAGGCGTCGCGATCGGATTAATGAAAAGATGAAAGCTCTGCAAGAACTTATACCTCGTTGTAATAAGTCAGATAAAGCTTCAATGCTGGATGAAGCAATTTCATACTTGAAGTCATTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTACATGCCAGCaattggaatgggggttggaatgggtatgggtatggaaatgggaatgAACAGACCAGTTATACCGTTTCCTAATATGTTACCTGGTTCGGCTATGCCAGCAGCAACTGCTGCTACTCATTTGGGACCTAGGTTTGCCATGCCTCCTTTCCACATGCCGCATGTTCCTGCACCTGATTCGTCTAGAATGCAAGCAGCAAAGACAGATAATAATATGGTCACCTCAGCTGGTCCACCTGATCCAAATCAGTCACGTATCCCAAACATCACTGATCCTTATCAACAATATCTTGGTCCCCACCAGATGCAGTTTCAATTAAATCAGgcaatgaatcaaccaaatgttagcaagccaagtaccaGTAAGGGCCTTGAGAATCCAGAAAGCCATTAA 1389 0.4795 MEDDPTLKPSGLPRQNKPSISIADDQIMELLWQNGQVVMHSQNHRSLRKPPLQNYNPHLFMQEGQMPSWLHYPIDDVHPPFEFDQTFCADFLHSPPTVNNNTAMQTLGPSSHLTDLRPPPSPRPPIPPPRRPDPETQNFAYFSRHSARAEPSVKTAARESTVVDSCDTAAAASRVSSAAEGAGGVAAPSTMMCDVTMTTSGGSSSSGEPVQVAAAEERKRKGREAAAEEWECQSEDVDFESEAKKQARGSTSTKRSRAAEVHNLSERRRRDRINEKMKALQELIPRCNKSDKASMLDEAISYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPAIGMGVGMGMGMEMGMNRPVIPFPNMLPGSAMPAATAATHLGPRFAMPPFHMPHVPAPDSSRMQAAKTDNNMVTSAGPPDPNQSRIPNITDPYQQYLGPHQMQFQLNQAMNQPNVSKPSTSKGLENPESH 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02280 462 MobiDBLite consensus disorder prediction 196 273 - -
Cca03g02280 462 SMART finulus 263 312 IPR011598 GO:0046983
Cca03g02280 462 MobiDBLite consensus disorder prediction 402 462 - -
Cca03g02280 462 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 257 306 IPR011598 GO:0046983
Cca03g02280 462 Pfam Helix-loop-helix DNA-binding domain 261 307 IPR011598 GO:0046983
Cca03g02280 462 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 11 56 - -
Cca03g02280 462 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 54 462 - -
Cca03g02280 462 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 54 462 IPR031066 -
Cca03g02280 462 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 11 56 IPR031066 -
Cca03g02280 462 Coils Coil 263 283 - -
Cca03g02280 462 MobiDBLite consensus disorder prediction 99 137 - -
Cca03g02280 462 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 255 323 IPR036638 GO:0046983
Cca03g02280 462 MobiDBLite consensus disorder prediction 259 273 - -
Cca03g02280 462 CDD bHLH_AtPIF_like 257 320 - -
Cca03g02280 462 MobiDBLite consensus disorder prediction 115 134 - -
Cca03g02280 462 MobiDBLite consensus disorder prediction 196 210 - -
Cca03g02280 462 MobiDBLite consensus disorder prediction 213 230 - -
Cca03g02280 462 Gene3D - 252 315 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02280 Cca-Chr3 43757055 43763734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02280 12 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 43.732 8.59e-59 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca03g02280 HLH 1.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02280 - - ccaj:109797642 863.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02280 03 43757055 43763734 Cca03g02280 03 43757055 43763734 ECH
Cca03g02280 03 43757055 43763734 Cca02g00943 02 25444395 25451123 PCT