Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02279 ATGGCAACTCCAAACTTGGTCACCCAATTAACTGCACTTATCGTGGATGACAATAAACTCAACCTAAAGATTCATCAAAAGATATTGGAGAGTGTTGGAGTGAAAAATCAAGGAGTGAAAAATGGCCGAGAAGCAGTGGACATTCATCACCAAGGACAAAGATTTGACCTCATTCTCATGGACTTGGATATGCCTATCATGAATGGCATTGAGGCAACAAAGAAGCTTCGGTCAATGGTATTGATAGCATGA 252 0.4048 MATPNLVTQLTALIVDDNKLNLKIHQKILESVGVKNQGVKNGREAVDIHHQGQRFDLILMDLDMPIMNGIEATKKLRSMVLIA 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02279 83 CDD REC_hyHK_CKI1_RcsC-like 13 79 - -
Cca03g02279 83 PANTHER TWO-COMPONENT RESPONSE REGULATOR 7 79 - -
Cca03g02279 83 Pfam Response regulator receiver domain 13 78 IPR001789 GO:0000160
Cca03g02279 83 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 7 79 - -
Cca03g02279 83 Gene3D - 2 81 - -
Cca03g02279 83 ProSiteProfiles Response regulatory domain profile. 11 83 IPR001789 GO:0000160
Cca03g02279 83 SUPERFAMILY CheY-like 9 78 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02279 Cca-Chr3 43734751 43735700 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02279 13 79 Response Regulator Gene Family AT3G04280 51.471 5.34e-18 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca03g02279 Response_reg 3.9e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02279 - - gmx:100794931 130.568