Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02274 ATGGACAACTTGTTTCGCCTAGTAGACCACGAAGACTTGTTCTCTCGTCGTTGCATTTGGGTCAACGGCCCTGTGATCGTAGGTGCAGGTCCTTCAGGGCTAGCCACAGCAGCATGCCTTAGAGAACAAGGGGTACCCTTCATGGTTCTCGAACGTGCAGATTGCATAGCCTCACTGTGGCAAAAACGCACCTACGACAGACTCAAACTCCACCTCCCTAAGCAATTCTGCCAGCTCCCTAAACTAGCCTTCCCCCAACACTTCCCCGAGTACCCCACAAAGAAACAGTTCATAGAGTACCTAGAATCCTACGCTAACCACTTCGACATCAACCCTCAGTTCAACCAGTGTGTTCAGTCCGCAAGGTACGATCAGACTAGTGGCTTGTGGCGTGTCAAGACCGTTTCCTCCTCTTCTGGCTCCTCACGCAACGAGGTTGAGTACATTTGCAGGTGGCTTGTCGTGGCCACTGGGGAGAATGCTGAGTGTGTTGTGCCTGAGATTGAAGGGTTGACTGAGTTCAAAGGTGATGTCATCCATGCCTGTGATTACAAGTCGGGGGAACCCTTCAAGGGGAAGAAGGTTCTTGTTGTTGGATGTGGCAATTCCGGCATGGAGCTCTCACTTGACCTTTGCAACCACCATGCCTCTCCATCCATGGTTGTTCGCAGCTCGGTTCACGTGTTGCCTAGAGAAGTGTTTGGGAAATCGACGTTTGATCTGCGGCGTGGCCTGCCACTATGGCTTGTGGACAAGATTCTCTTGATCTTGGCTTGGTTTGTTTTGGGGAACATAGAGAAGTTGGGGCTGAAAAGGCCTTCAAAGGGTCCTTTGGAGCTGAAGAACACAAAGGGGAAGACCCCGGTTTTGGACATTGGTGCCTTGGAGAAGATTAGATCCGGTGAAATAGAAGTGGTACCAGGGATCAAGAGGTTCAACAATGGTGAAGTTGAGTTTGTTAATGGTGAAAAGATCGATATTGATGCAGTGGTGCTTGCAACCGGTTACCGCAGCAACGTCCCTTCTTGGCTTCAGGAAGGTGAATTTTTCTCAAAGAGTGGATACCCAAAAATGCCATTTCCTCATGGTTGGAAGGGAAATGCAGGGCTTTATGCTGTGGGGTTCACAAAGAGAGGGCTCTCTGGTGCTTCTTCTGATGCTGTGAAAATTGCTCAAGATATTGGCCAAGTTTGGAAGAATGAGACTAAGCAAAAGAAACAACGCACTACAGCTTGTCATAGACGTTGCATTTCCCAATTCTAA 1263 0.4909 MDNLFRLVDHEDLFSRRCIWVNGPVIVGAGPSGLATAACLREQGVPFMVLERADCIASLWQKRTYDRLKLHLPKQFCQLPKLAFPQHFPEYPTKKQFIEYLESYANHFDINPQFNQCVQSARYDQTSGLWRVKTVSSSSGSSRNEVEYICRWLVVATGENAECVVPEIEGLTEFKGDVIHACDYKSGEPFKGKKVLVVGCGNSGMELSLDLCNHHASPSMVVRSSVHVLPREVFGKSTFDLRRGLPLWLVDKILLILAWFVLGNIEKLGLKRPSKGPLELKNTKGKTPVLDIGALEKIRSGEIEVVPGIKRFNNGEVEFVNGEKIDIDAVVLATGYRSNVPSWLQEGEFFSKSGYPKMPFPHGWKGNAGLYAVGFTKRGLSGASSDAVKIAQDIGQVWKNETKQKKQRTTACHRRCISQF 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02274 420 SUPERFAMILY FAD/NAD(P)-binding domain 193 394 IPR036188 -
Cca03g02274 420 Pfam Flavin-binding monooxygenase-like 26 341 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cca03g02274 420 PRINTS Pyridine nucleotide disulphide reductase class-II signature 23 45 - -
Cca03g02274 420 PRINTS Pyridine nucleotide disulphide reductase class-II signature 190 214 - -
Cca03g02274 420 PRINTS FAD-dependent pyridine nucleotide reductase signature 194 212 - -
Cca03g02274 420 PRINTS FAD-dependent pyridine nucleotide reductase signature 24 43 - -
Cca03g02274 420 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA3-RELATED 10 418 - -
Cca03g02274 420 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 10 418 - -
Cca03g02274 420 Gene3D - 23 406 IPR036188 -
Cca03g02274 420 SUPERFAMILY FAD/NAD(P)-binding domain 25 296 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02274 Cca-Chr3 43658333 43660229 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02274 K11816 - gmx:100796169 808.135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02274 03 43658333 43660229 Cca03g02274 03 43658333 43660229 ECH
Cca03g02274 03 43658333 43660229 Cca02g00153 02 2986906 2989331 PCT
Cca02g01534 02 33915961 33924612 Cca03g02274 03 43658333 43660229 PCT