Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02272 ATGGCTGCTGCTGCCAATCCTGTAGTTGGGTCCCATATTTGGGTGGAGGATCCTGATGTGGCTTGGATAGATGGTGAGGTCCTTGAGGTTAAAGGAGAAGAAATTAAAGTCCTTTGCACTTCAGGGAAGACGGTTGTTGTTAAAGCTTCCAGTATTTATCATAAAGATACTGAAGTCCCACCAAGTGGAGTGGATGATATGACAAAGCTTGCATACCTGCATGAACCTGGAGTCCTAGATAACCTGAGATCAAGATATGATATAAATGAAATTTATACTTACACTGGGAATATATTGATTGCTGTGAACCCTTTTATAAAGCTCCCTCATTTATATGATAGCCATATGATGGCACAATATAAAGGAGCAGCTTTTGGTGAGCTAAGTCCACATCCCTTTGCTGTTGCAGATGCAGCATATAGGCTTATGATAAACGAGGGAATCAGCCAGTCAATATTGGTTAGTGGTGAAAGTGGAGCTGGTAAAACAGAAAGTACCAAGTTACTCATGAGGTATCTTGCTTACATGGGTGGGAGAGTTGCTGTTGCTGAAGGTAGAACTGTTGAGCAAAAGGTCCTTGAGTCCAATCCTGTTCTAGAAGCCTTTGGCAATGCAAAGACTGTTAGGAACAATAATTCAAGTCGTTTTGGCAAGTTTGTGGAgattcaatttgaccagaagggaagaatttcaggagctgctataaggacttatctgcttgaaagatcacgtgtttgccaggtgtcagatccggagaggaactatcattgtttctacatgctctgtgctgcacctccggagGATATTAAAAAGTACAAATTAGAAGATCCAAGAACGTTTCATTATTTGAATCAATCAAATTGCTTTCAGTTGGAAGGGGTTGATGAATCTAAAGAATATAGAGACACAAGGAGAGCAATGGATATTGTTGGAATAAGTTCTAAGGAGCAGGATGCAATATTTCAAGTTGTTGCTGCAATTTTACATCTTGGCAACATTGAATTTGTCAAAGGGAAAGAAATAGACTCATCTATTCCTAAAGATGAAAAATCTCGGTTTCATCTACAGACTGCAGCTGAGCTTTTCATGTGTGATGCAAAGGCACTTGAAGATTCTCTTTGCAAACGTGTAATTGTTACTCGTGATGAAACAATTACAAAATGGCTGGATCCGGAAGCTGCTGCACTCAGCAGAGATGCCTTGGCTAAGATTGTATACACAAGATTGTTTGACTGGTTGGTTGATAAAATTAATAATTCTATTGGCCAAGACCCTCAGTCAAAATCCTTAATTGGCGTGCTGGATATTTATGGTTTTGAGAGTTTCAAGACTAACAGTTTTGAGCAATTTTGTATAAATTTGACCAATGAAAAGCTTCAGCAACATTTTAATCAGCATGTTTTCAAAATGGAGCAAGAAGAATACAAAAAAGAAGAAATTGATTGGAGTTACATTGAATTCGTGGACAATCAAGATATTCTGGATCTCATTGAAAAGAAACCTGGTGGCATAATAGCTCTTCTGGATGAAGCTTGTATGTTTCCTAGATCTACACATGAAACTTTTGCCCAAAAGTTGTATCAGACCTTCAAAAACCATAAAAGGTTTAGCAAGCCTAAATTATCACGTAGTGACTTCACAATTTGCCATTATGCTGGAGATGTCACTTATCAAACTGAATTTTTCCTCGACAAGAACAAAGATTATGTTGTTGCAGAACACCAGGCACTTCTTTATGCTTCCAAATGTCCGTTTGTATCGGGCTTGTTTACCCCTTCACCTGAGGAATCTTCCAAGCAATCAAAGTTCTCTTCAATAGGTTCACGATTTAAGCAACAATTGCAATCCTTACTTGAAACTCTCAGTGCCACTGAGCCACACTACATTCGTTGTGTAAAACCCAATAACCTTCTTAAGCCAGCAATTTTTGAGAATAAAAATGTTTTGCTGCAACTACGTTGTGGGGGAGTTATGGAGGCAATTAGGATAAGCTGTGCTGGGTATCCTACTAGAAAAGCCTTTGAAGAATTTGTGGATCGATTTAGTCTTCTTGCACCTGAAGCATTGGATGGAAGTTCTGATGAGGTCACTGCTTGCAAGAGGATTCTAAAGAATGTCGGACTTGAAGGCTATCAGATTGGTAAGACAAAAGTGTTTCTTCGAGCTGGTCAGATGGCAGAACTAGATACCCGTAGAAGTGAAATCTTAGGAAAGTCAGCAAGCATTATTCAGAGAAAAGTTCGTTCCTATTTGGCCCGCCAAAGTTTCATCTTGCTTCGTTTGTCCGCCATTTGGATTCAAGCTGCTTGCAGAGGACAACTTGCTAGGCAAGTATATGAGGGAATGCGGCAGGAGGCTTCTAGTTTGATGATTCAAAGGTGCTTCCGCATGCATATTGCTAGGAGTGCATACAAAAAATTGTATACTTCTGCTGTCTCTATCCAGACTGGTTTGCGGGGGTTGGCTGCTCGTTGTGAGCTAGATTTTAGAAGGCGGACTAAAGCAGCAATTGTCATTCAGAGCCACTGCCGGAAATACTTGGCACGAATTCATTTCACAAAATTAAAGAAGGCAGCAATTACAACACAATGTGCATGGAGAGGAAAAGTTGCACGGCAAGAATTGCGAAAGCTCAAGATGGCTGCAAGAGAAACAGGAGCTCTCCAAGCTGCCAAAAATAAGCTTGAAAAGCAAGTTGAAGACCTTACATTAAGGTTGCAGCTGGAAAAACGTTCAAGGGTTGACATGGAAGAAGCAAAAACACAAGAAAATCAAAGATTACAATCTGCTTTGCAAGAGATGCAACTTCAGTTTAAAGAAACTAAGTCACTTCTTGAAAAGGAGAGGGAGGCTACAAAAAGGGCAGCAGAGAGAGAGCCCATCATACAGGAGGTTCCGGTTGTTGACCATGCTTTGTTGGAGAAGCTCAGTAGTGAGAATGAGAAACTCAAGAACATGGTGAGTTCACTGGAAAAGAAAATTGATGAAACGGAAAAAAGGTATGAAGAGGCAAACAGAATTGGCGAAGAAAGGTTGAAGCAAGCTTTGGATGCAGAATCAAAAGTAATCCAGTTGAAGACTGCTATGCAAAGGCTAGAAGAGAAATTCATGGACATGGAATCTGCAAACCATATTCTTCAGAAACAATCTCTCCTAAACTCATCTATGAAAACAATAGCAGAGCACCTGTCTTCCCCAGAGAAGTTAGAAAATGGTCACCACGTGGCAGAAGAGCAGAAAGCTGATGATACATGTGTCACACCTGTGAAACAATTCGGTACAGAATCTGACGCTAAATTGAGGAGGTCTTACATTGAACGACAACATGAGAGTGTCGATTCACTTGTCAACTGTGTTATGAaaaatattggcttcaatcatggaaaacccattgctgcattcaccatttacaaatgtctgctccactggaaatcattcgaagctgaaagaactagtgtatttgatcgccttatccaaatgattggttttgaaattgagAATCAAGATGGCAATGATCATATGGCCTATTGGCTGTCAAATACATCTGCGTTGTTGTTTTTACTTGAACAAAGCCTGAAATCCGGGAGTTCAGCTAATGCTACCCCAGCTAGAAAACCACCTAATCCAACATCCCTCTTTGGAAGAATGACTATGAGTTTTCTTTCATCTCCTTCTTCTGCCAACCTTGCTGCCCCTCCTTCAGATGTTGTACGCAAGGTAGAGGCTAAGTACCCTGCTTTGCTTTTCAAGCAGCAGCTCACAGCCTATTTGGAGAAAATATATGGCATCATTCGGGATAATTTGAAGAAGGATTTAACACCAGTTCTTGCACTATGCGTCCAGGCTCCAAGAACATCAAAGGGAGGGTTACGTTCTGGCCGATCCTTTGCTAAAGATTCCCCAATGATTCACTGGCAGAGTATTATTGAATCTCTCAATACCCTCCTCTGTACACTGAAAGAGAACTTTGTGCCTCCAGTTCTTATCCAAAAGATCTTCAGTCAAACATTCTCATTTATTAATGTGCAACTCTTCAATAGTCTTCTTCTTCGGCGTGATTGTTGCACATTCAGCAACGGGGAATATGTGAAAGCTGGATTAGCTGAATTAGAGTTGTGGTGCTGCCAAGCAAAGGAAGAGTATGCAGGGTCATCTTGGGATGAGCTTAAGCACATAAGACAGGCTGTTGGATTCTTGGTTATTCATCAGAAGTATAGGATTTCCTATGATGAAATCATCAATGATTTATGCCCTATCTTGAGTGTCCAGCAGCTGTATAGAATATGTACACTTTACTGGGATGGTAACTACAATACTCGAAGTGTATCTCCTGATGTCCTTTCAAGCATGAGGATGCTAATGGCTGAGGACTCCAATAATGCTCAGAGTGATTCTTTCTTGCTGGATGACAATTCCAGCATCCCCTTCTCAGTGGAAGATCTCTCTACATCACTGCAAGAGAAGGATTTCTCAGACATGAAACCAGCAGATGAGCTTCTTGAAAATCCAGCCTTCCAATTTTTGAATGAGTAG 4533 0.3819 MAAAANPVVGSHIWVEDPDVAWIDGEVLEVKGEEIKVLCTSGKTVVVKASSIYHKDTEVPPSGVDDMTKLAYLHEPGVLDNLRSRYDINEIYTYTGNILIAVNPFIKLPHLYDSHMMAQYKGAAFGELSPHPFAVADAAYRLMINEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRVAVAEGRTVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQKGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDIKKYKLEDPRTFHYLNQSNCFQLEGVDESKEYRDTRRAMDIVGISSKEQDAIFQVVAAILHLGNIEFVKGKEIDSSIPKDEKSRFHLQTAAELFMCDAKALEDSLCKRVIVTRDETITKWLDPEAAALSRDALAKIVYTRLFDWLVDKINNSIGQDPQSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKNHKRFSKPKLSRSDFTICHYAGDVTYQTEFFLDKNKDYVVAEHQALLYASKCPFVSGLFTPSPEESSKQSKFSSIGSRFKQQLQSLLETLSATEPHYIRCVKPNNLLKPAIFENKNVLLQLRCGGVMEAIRISCAGYPTRKAFEEFVDRFSLLAPEALDGSSDEVTACKRILKNVGLEGYQIGKTKVFLRAGQMAELDTRRSEILGKSASIIQRKVRSYLARQSFILLRLSAIWIQAACRGQLARQVYEGMRQEASSLMIQRCFRMHIARSAYKKLYTSAVSIQTGLRGLAARCELDFRRRTKAAIVIQSHCRKYLARIHFTKLKKAAITTQCAWRGKVARQELRKLKMAARETGALQAAKNKLEKQVEDLTLRLQLEKRSRVDMEEAKTQENQRLQSALQEMQLQFKETKSLLEKEREATKRAAEREPIIQEVPVVDHALLEKLSSENEKLKNMVSSLEKKIDETEKRYEEANRIGEERLKQALDAESKVIQLKTAMQRLEEKFMDMESANHILQKQSLLNSSMKTIAEHLSSPEKLENGHHVAEEQKADDTCVTPVKQFGTESDAKLRRSYIERQHESVDSLVNCVMKNIGFNHGKPIAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGFEIENQDGNDHMAYWLSNTSALLFLLEQSLKSGSSANATPARKPPNPTSLFGRMTMSFLSSPSSANLAAPPSDVVRKVEAKYPALLFKQQLTAYLEKIYGIIRDNLKKDLTPVLALCVQAPRTSKGGLRSGRSFAKDSPMIHWQSIIESLNTLLCTLKENFVPPVLIQKIFSQTFSFINVQLFNSLLLRRDCCTFSNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEIINDLCPILSVQQLYRICTLYWDGNYNTRSVSPDVLSSMRMLMAEDSNNAQSDSFLLDDNSSIPFSVEDLSTSLQEKDFSDMKPADELLENPAFQFLNE 1510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02272 1510 ProSiteProfiles IQ motif profile. 784 813 IPR000048 GO:0005515
Cca03g02272 1510 PANTHER MYOSIN-14 6 1508 - -
Cca03g02272 1510 ProSiteProfiles IQ motif profile. 807 836 IPR000048 GO:0005515
Cca03g02272 1510 Gene3D - 667 734 - -
Cca03g02272 1510 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca03g02272 1510 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca03g02272 1510 PRINTS Myosin heavy chain signature 197 224 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca03g02272 1510 PRINTS Myosin heavy chain signature 430 458 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca03g02272 1510 PRINTS Myosin heavy chain signature 483 511 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca03g02272 1510 ProSiteProfiles IQ motif profile. 832 861 IPR000048 GO:0005515
Cca03g02272 1510 Pfam Myosin N-terminal SH3-like domain 10 52 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cca03g02272 1510 ProSiteProfiles Myosin motor domain profile. 62 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca03g02272 1510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 788 884 IPR027417 -
Cca03g02272 1510 Pfam IQ calmodulin-binding motif 762 779 IPR000048 GO:0005515
Cca03g02272 1510 Pfam IQ calmodulin-binding motif 787 805 IPR000048 GO:0005515
Cca03g02272 1510 Pfam IQ calmodulin-binding motif 738 756 IPR000048 GO:0005515
Cca03g02272 1510 Pfam IQ calmodulin-binding motif 833 852 IPR000048 GO:0005515
Cca03g02272 1510 Pfam IQ calmodulin-binding motif 857 876 IPR000048 GO:0005515
Cca03g02272 1510 CDD MyosinXI_CBD 1106 1479 IPR037975 GO:0007015
Cca03g02272 1510 PANTHER MYOSIN 6 1508 - -
Cca03g02272 1510 ProSiteProfiles IQ motif profile. 759 788 IPR000048 GO:0005515
Cca03g02272 1510 Coils Coil 878 951 - -
Cca03g02272 1510 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Cca03g02272 1510 SMART MYSc_2a 56 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca03g02272 1510 ProSiteProfiles IQ motif profile. 855 884 IPR000048 GO:0005515
Cca03g02272 1510 Gene3D - 253 311 - -
Cca03g02272 1510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 786 IPR027417 -
Cca03g02272 1510 Gene3D Kinesin motor domain 65 663 IPR036961 -
Cca03g02272 1510 Coils Coil 973 1007 - -
Cca03g02272 1510 Coils Coil 1015 1049 - -
Cca03g02272 1510 CDD MYSc_Myo11 76 721 IPR036018 -
Cca03g02272 1510 ProSiteProfiles Dilute domain profile. 1155 1456 IPR002710 -
Cca03g02272 1510 Gene3D Myosin VI head, motor domain, U50 subdomain 313 602 - -
Cca03g02272 1510 SMART DIL_2 1331 1438 IPR002710 -
Cca03g02272 1510 Pfam DIL domain 1332 1434 IPR002710 -
Cca03g02272 1510 Gene3D - 440 624 - -
Cca03g02272 1510 SMART iq_5 783 805 IPR000048 GO:0005515
Cca03g02272 1510 SMART iq_5 831 853 IPR000048 GO:0005515
Cca03g02272 1510 SMART iq_5 735 757 IPR000048 GO:0005515
Cca03g02272 1510 SMART iq_5 806 828 IPR000048 GO:0005515
Cca03g02272 1510 SMART iq_5 758 780 IPR000048 GO:0005515
Cca03g02272 1510 SMART iq_5 854 876 IPR000048 GO:0005515
Cca03g02272 1510 Pfam Myosin head (motor domain) 64 721 IPR001609 GO:0003774|GO:0005524|GO:0016459
Cca03g02272 1510 Gene3D - 736 785 - -
Cca03g02272 1510 Gene3D - 786 833 - -
Cca03g02272 1510 Gene3D - 834 883 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02272 Cca-Chr3 43608883 43626107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02272 1 1509 Myosins gene family AT5G43900 74.917 0.0 2352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02272 K10357 - gmx:100795648 2812.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02272 03 43608883 43626107 Cca03g02272 03 43608883 43626107 ECH
Cca03g02272 03 43608883 43626107 Cca02g00953 02 25625055 25644076 PCT