Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02269 ATGAATTCGTGGGGAGGGATTAAGATCTTCCACCGCATTTCATGGATCCGGAATCGGAGCCTCCTGCATTGTCTTCTCTCTCCTAGGGTTTCGCGCTTCCGTCTATGCGCCCTCTCTCTTCCTCCTCCGCCTGCTGCGGTCTCCGCCATGACCGCCGCCGGAATTTCTCCTGACGATGCTCTTCGCCGCTCTCGCCTTCCACCAGAGAGAATGCCGCTCTCGCGCTTCTTCCTCCTTGCTTTTCTCAACTTGCTTTTCTCTTCCCAAGTGAAGTCGTTTTCTCTAGGTTTGTCATTTGCTTCATCAGAACAAGCTAAAATATGGTTGCTTAAACCTTCTTCTGGACCATCTTCTGCACCAGTGCCATCTCCATCTTATCAAGGTCATCATGTGACTCCAAGACCAAGACATCATTATCATCACCATCGGCGTCACAACATGAGACCTCATGTAGTGGCTCCACCCCCTTCAAAAGACCAAGCGTGTGGCCAAATCTGTACTGATCCGCTCACATCAACTCCCTTTGGTTCACCTTGTGGTTGTGTATTTCCCATGAAAGTCAGACTTACACTGGATGTAGCTCCTTTTGCTGTTTTTCCAGTAATGACTGAGTTAGAGAATGAAATTGCATTAGGCACATATTTAGAGCAGAGTCAGGTGAAGATAATGGGTGCAACAGCTGACAGTCAAAATCAGGAAAGAACTATTGTTGATATTAACTTGGTTCCGCTGGGAGAGAAATTTGACAATACAACTGCAGCTCTGACCTATGAGAGGTTTTGGCACAAGAAAGTTCCTCTAAATAGGAGTCTTTTTGGCGATTATGCTGTTGTCTATATTATTTATCCAGGTATTTGTGTTTCTCCTTATAACATTTTAATTTACTGCGGTCCCAGTCAAAGTGTTGATGGTATTCTGCCAGTCAGTGCCAATTTTGTCAGCAAGAACCAGAAAATGAGTCTAAGGACCATAATCATCATTGGTTTATCTTCCTTTGTACTCTTGCTGGTTTTGGTGGGAGCATTTTCAATTATTTTGAAATGGAGGAAGACTAGGAGACCATCAAGTGCTGTTGGCCCTGCATTCACATCATCCCTAAACAAGAGATCTGGCTTGGGGTCTATGTTGTCAAGCAGTATTGCAAGTTCAACATCAGTGTCACTTATGTCCACAATGGCTACTTCCATTCTCTCTGCTAAAACATTTTCACTTTCTGAGCTTGAGAAAGCAACAGATAAGTTTAATTCAAAGAGAGTACTAGGTGAAGGAGGATTTGGACGTGTTTATAGTGGGACATTGGAAGATGGAGCTGAAGTTGCAGTTAAGCTGCTAACAAGGGATAATCAAAATGGAGACCGTGAGTTTATTGCAGAGGTTGAGATGCTAAGCCGTTTGCATCACCGTAATCTAGTGAAACTGATTGGTATATGCATTGAAGGGCGCAGGCGTTGCTTGGTATATGAGCTTGTTCGCAATGGCAGTGTTGAGTCCCATTTACATGGTGATGACAAAATTAAGGGAATGCTGGATTGGGAAGCACGGATGAAAATTGCCCTAGGAGCTGCGAGAGGATTAGCATATCTTCACGAGGATTCCAATCCCCGAGTAATTCATCGAGACTTTAAAGCTAGCAATGTGTTACTAGAAGATGACTTTACTCCCAAAGTTTCTGATTTTGGCTTGGCAAGAGAAGCAACTGAAGGAAGTAATCATATTTCAACACGGGTGATGGGAACTTTTGGGTATGTTGCTCCAGAATATGCAATGACAGGGCATTTGCTCgtcaaaagtgatgtttatagttatggtgttgtgctgcttgaacttctcacaggcagaaagccagtggaTATGTCTCAACCTCAGGGACAGGAGAATCTTGTAACTTGGGCACGACCACTATTGACGAGTAGGGAAGGTCTAGAACAGCTGGTGGATCCATCTTTGGCCGGAAGTTACAACTTTGATGACATGGCAAAGGTTGCGGCTATTGCCTCAATGTGTGTTCACCCGGAGGTTACCCAGAGACCTTTTATGGGTGAAGTTGTGCAGGCACTTAAGTTGATATACAATGACACAGATGAAACTTGTGGAGATTGTTGTAGTCAGAAGGATTCCTCTGCTCGGGAATCTGATTTTAGAGGTGACCTTGCCCCTTCTGATAGCAGTTGGTGGAATGCGGGAGGAGTAACCCCTCGATTAACTTATGGACAAGCATCTTCCTTCATCACTATGGAATACAGTTCTGGTCCACTTGAAGAAATGGATAACAGACCGTTTTCAACTTCAAGCTTGATTGGAGATGAAATGTCTTTACCAATTAAACATGGGAATAGATCAGGTCCCTTGAGAACAGTCCGAAGCAAGCTGTCCTTACATAGATTTACAGGAAGTCGGAGTGAGCATGGAGGACCTTCTTCCAAGCGCAATTGGAATGATGGTTTCTGGGTTTAA 2454 0.4303 MNSWGGIKIFHRISWIRNRSLLHCLLSPRVSRFRLCALSLPPPPAAVSAMTAAGISPDDALRRSRLPPERMPLSRFFLLAFLNLLFSSQVKSFSLGLSFASSEQAKIWLLKPSSGPSSAPVPSPSYQGHHVTPRPRHHYHHHRRHNMRPHVVAPPPSKDQACGQICTDPLTSTPFGSPCGCVFPMKVRLTLDVAPFAVFPVMTELENEIALGTYLEQSQVKIMGATADSQNQERTIVDINLVPLGEKFDNTTAALTYERFWHKKVPLNRSLFGDYAVVYIIYPGICVSPYNILIYCGPSQSVDGILPVSANFVSKNQKMSLRTIIIIGLSSFVLLLVLVGAFSIILKWRKTRRPSSAVGPAFTSSLNKRSGLGSMLSSSIASSTSVSLMSTMATSILSAKTFSLSELEKATDKFNSKRVLGEGGFGRVYSGTLEDGAEVAVKLLTRDNQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRRRCLVYELVRNGSVESHLHGDDKIKGMLDWEARMKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEDDFTPKVSDFGLAREATEGSNHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPQGQENLVTWARPLLTSREGLEQLVDPSLAGSYNFDDMAKVAAIASMCVHPEVTQRPFMGEVVQALKLIYNDTDETCGDCCSQKDSSARESDFRGDLAPSDSSWWNAGGVTPRLTYGQASSFITMEYSSGPLEEMDNRPFSTSSLIGDEMSLPIKHGNRSGPLRTVRSKLSLHRFTGSRSEHGGPSSKRNWNDGFWV 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02269 817 Pfam Protein tyrosine and serine/threonine kinase 416 686 IPR001245 GO:0004672|GO:0006468
Cca03g02269 817 ProSitePatterns Protein kinases ATP-binding region signature. 420 442 IPR017441 GO:0005524
Cca03g02269 817 Gene3D Phosphorylase Kinase; domain 1 385 489 - -
Cca03g02269 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 536 548 IPR008271 GO:0004672|GO:0006468
Cca03g02269 817 Gene3D Transferase(Phosphotransferase) domain 1 490 710 - -
Cca03g02269 817 ProSiteProfiles Protein kinase domain profile. 414 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02269 817 CDD STKc_IRAK 420 689 - -
Cca03g02269 817 MobiDBLite consensus disorder prediction 796 817 - -
Cca03g02269 817 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 76 814 - -
Cca03g02269 817 SUPERFAMILY Protein kinase-like (PK-like) 393 689 IPR011009 -
Cca03g02269 817 PANTHER OS01G0750732 PROTEIN 76 814 - -
Cca03g02269 817 MobiDBLite consensus disorder prediction 118 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02269 Cca-Chr3 43562510 43572628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02269 165 806 Receptor kinase-like Gene Family AT5G56890 53.973 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Cca03g02269 PK_Tyr_Ser-Thr 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02269 - - gmx:100792309 1320.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02269 03 43562510 43572628 Cca03g02269 03 43562510 43572628 ECH
Cca03g02269 03 43562510 43572628 Cca02g01293 02 31066995 31073726 PCT