Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02258 ATGGAGGAAGGCCAAGGCAGCAACAAACACAAAGTGATAATCGCTCCTATACTTGAAGCTGAAACTGAAAGGGAAAAGTTGGGAAATGAATTCAGTGCAATTGTTGTAGAGGAAGATGTTGTCGTCAGAATGGGTCACAAAGAGATTTTGACATTAAATGGGGCGAAAACTTGTGATACTGTGGGAAATGGTCGAGAAGCCACGACCCTTCATCTCAATGGCAAAAGATTTGACATCATTCTCATGGATTTGGACATGCCTGATGATGATGGATTTAACACAATAGATACACTTCGTTCATTGGGCGTTCGCAGCTTGATTTTAAGTGTGTCGGGACCATGCTGTCCAGAAATTTTTCCTAGATTATTCAAGGAAGTGCCGATAGATGGCCACTTAATCAAACCCTTGACTGTTCAGATGCTTGGAGAAGCTCTTCAAAAGTTCAAATCATGA 453 0.415 MEEGQGSNKHKVIIAPILEAETEREKLGNEFSAIVVEEDVVVRMGHKEILTLNGAKTCDTVGNGREATTLHLNGKRFDIILMDLDMPDDDGFNTIDTLRSLGVRSLILSVSGPCCPEIFPRLFKEVPIDGHLIKPLTVQMLGEALQKFKS 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02258 150 ProSiteProfiles Response regulatory domain profile. 32 149 IPR001789 GO:0000160
Cca03g02258 150 SMART REC_2 31 145 IPR001789 GO:0000160
Cca03g02258 150 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 149 - -
Cca03g02258 150 SUPERFAMILY CheY-like 31 148 IPR011006 -
Cca03g02258 150 Gene3D - 18 150 - -
Cca03g02258 150 Pfam Response regulator receiver domain 34 145 IPR001789 GO:0000160
Cca03g02258 150 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 21 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02258 Cca-Chr3 43485010 43485574 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02258 31 137 Response Regulator Gene Family AT3G04280 36.111 3.03e-13 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca03g02258 Response_reg 4.8e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02258 - K20973 ccaj:109803786 297.36