Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02257 ATGGAAGGCCAAAGCAGCAACAAACGCAAAGCGATAGCTGAACCTGAGTGGGACTATGAATTCAGTGCACTTGTTGTAGAAGAAGATGCGGACGTGAGAATGGCTCACAAAGAGATTTTGACATTAGTTGGGGCGAGAACTTGTGATACTGTAGGAAATGGCCAAGAAGCCGTGAACCTTCATCTCAATGGCAAAACATTTGATCTCATTCTCATGGATTTTGACATGCCTGGTGGTGATGGATTTGTGACAACAAATAAGCTTCGTTCAATGGGGGTTCATAGCTTGATTTTAAGTGTGTCGGGACCGTGCTCTCAAGATACTGTGCAAAGATTTTTGAAGGAAATCCCGATAGATGGCCACTATATCAAACCCTTGACTGTTCAGATGCTTCAAGAAGCTCTTCAAAAGCTAAACTTAAAGCCATGA 429 0.4289 MEGQSSNKRKAIAEPEWDYEFSALVVEEDADVRMAHKEILTLVGARTCDTVGNGQEAVNLHLNGKTFDLILMDFDMPGGDGFVTTNKLRSMGVHSLILSVSGPCSQDTVQRFLKEIPIDGHYIKPLTVQMLQEALQKLNLKP 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02257 142 CDD REC_hyHK_CKI1_RcsC-like 24 135 - -
Cca03g02257 142 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 140 - -
Cca03g02257 142 Gene3D - 7 141 - -
Cca03g02257 142 SMART REC_2 21 135 IPR001789 GO:0000160
Cca03g02257 142 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 15 140 - -
Cca03g02257 142 Pfam Response regulator receiver domain 24 135 IPR001789 GO:0000160
Cca03g02257 142 ProSiteProfiles Response regulatory domain profile. 22 139 IPR001789 GO:0000160
Cca03g02257 142 SUPERFAMILY CheY-like 22 138 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02257 Cca-Chr3 43481424 43482376 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02257 21 127 Response Regulator Gene Family AT3G04280 39.815 4.08e-17 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca03g02257 Response_reg 1.2e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02257 - - ccaj:109803786 182.57