Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02254 ATGGCTTTCGATGAAATCTCGAGTACCACGTTGTTttcttctttttcttcttcttTGGGATCGTTTGACACCCTTTGGAGTGCGATCCTCGGGTTGCCTTGGGTGGAAGTGGTGGAAATCTGTGCCAACTCGACACTGTTTCTTCTCTTTCTCTTTGTTTTTTCGGCGAGGAAGTGTGTGGGGGAAAGAGTTGGGTTTGGTAAGGACAATAGAACCGGCAATGTTGGTGTTGATTTGGAAACACGTGGCGTTCGGATTGGAACGTGGTTCAACTTCTCGGTGTTGTCTTGTTTCTATGTTCTGTTGGTGCAAGTTTCGGTCTTGGGATTCGATGGGGTTGGTTTGATTAAGAGAGGggaaggggatgtggatgtggatttgaatttggatttgTCTCTTATTTCTCTGCCTCTTGCACAGGGTTTAGCTTGGGTTGTGTTGAGCTTCTCGGCTTTGCAATGCAAGTTCAAGGGGTGTGAAAGGTTTCCAATTTTGTTGAGAGTTTGGTGGTTTGTGTCGTTTGTTATTTGTTTGTGTGGTTTGTATGTTGATGGCAGGGGGGTTTGGATGGAAGGTTCCAGACACCTGCGTTCTCATGTTGTGGGGAATTTCGCTGCTACTCCTGCTCTTGCCTTTTTGTGTATTGTTGCAATTAGGGGTGTTACTGGTATAAGGGTTTGTAGGAATTCTGAGGAGCAAGAGCCATTGCTTGTTGAGGAAGAACCCGGGTGTCTCAAGGTTACTCCTTATAGTGATGCTGGGATTTTCAGCTTGGCCACTTTGTCTTGGCTGAATCCACTTCTTTCCATTGGGGCAAAAAGGCCGCTTGAGCTTAAGGACATTCCCCTTGTTGCGCAGAAAGATCGGTCCAAGACAAATTATAAGGTTTTGAATTCTAATTGGGAGAGGTTGAAGGCCGAAAGCACGTCCCAGCAGCCTTCATTGGCTTGGGCACTTCTCAAGTCGTTCTGGAAGGAGGCGGCTTGTAATGCCATATTTGCTGGTGTCACTACTCTTGTCTCCTATGTTGGTCCATATATGATAAGTTACTTTGTTGATTACTTAGTTGGCAAAGAGATTTTCCCACATGAGGGGTATGTCCTTGCAGGGATATTCTTTGTGGCAAAGCTTGTGGAGACCTTGACTACTAGGCAGTGGTATCTAGGGGTGGACATATTGGGTATGCATGTTAGGTCAGCTCTAACAGCAATGGTATATCGAAAGGGGCTAAGGCTGTCGAGCTTGGCCAAACAAAGTCATACGAGTGGGGAGATTGTAAACTATATGGCTATTGATGTTCAGAGGGTTGGGGACTACTCTTGGTATCTTCATGACATGTGGATGCTTCCTCTGCAGATTGTTCTTGCCCTTGCAATTTTGTATAAGAATGTTGGAATTGCTTCTATTGCAACCCTGATTGCTACAATAATTTCCATTGTCGTCACTGTTCCTGTGGCCAGGATCCAAGAAGATTATCAAGACAAATTAATGGCTGCTAAGGATGAAAGGATGAGAAAAACATCAGAGTGCCTGAGGAATATGAGGATTCTCAAGCTTCAAGCTTGGGAGGACAGATATAGAATAAAATTGGAGCAAATGCGAGGAGTGGAGTTCAGGTGGCTTCGGAAAGCCCTCTATTCTCAGGCTTTCATAACTTTCATATTCTGGAGCTCCCCCATATTTGTTTCAGCAGTCACTTTTGGTACTTCCATATTGTTGGGTAGTCAGCTGACTGCTGGTGGTGTACTTTCTGCTCTGGCTACTTTCAGGATCCTGCAAGAACCTTTGAGGAATTTTCCAGACTTGGTGTCAACAATGGCTCAGACAAAAGTTTCTCTCGATCGATTATCTGGTTTCCTGCTGGAGGAAGAATTGCAGGAAGATGCAACAATTGTCTTGCCACAAGGCATTAGTAACATTGCTATAGAAATTACGGATGGTGCCTTCTGTTGGGACCCTTCTTCATCTGCTAGGCCTACCCTATCAGGGATAAGTATGAAAGTTGAAAGAGGGATGCGTGTGGCTGTTTGTGGTATGGTTGGTTCAGGGAAATCAAGTTTTCTTTCTTGCATACTTGGAGAGATTCCTAAGCTTTCTGGTGAAGTCAGAGTGTGTGGCTCTGCTGCATATGTCTCCCAATCAGCATGGATACAATCTGGAAATATAGAAGAAAATATCCTCTTTGGAAGCCCAATGGACAAAGCAAAGTACAAGAATGTTCTTCTTGCTTGTTCACTGAAAAAAGACCTAGAACTTTTCTCACATGGTGATCAGACTATTATAGGGGATAGAGGTATAAATCTGAGTGGTGGCCAGAAGCAGCGGGTTCAGCTTGCACGAGCACTATACCAAGATGCTGATATTTATCTTCTTGATGATCCCTTCAGTGCTGTTGATGCTCACACTGGATCAGACCTGTTTAGGGAGTATATATTGACAGCATTAGCAAATAAAACCGTCATTTATGTGACCCATCAAGTTGAATTTCTTCCCGCTGCTGACTTGATACTGGTTCTTAAAGAAGGCAGCATCATACAGGCAGGAAAGTATGATGATCTTTTACAAGCAGGAACAGATTTTAAAACACTGGTTTCAGCTCACCATGAAGCCATAGAGGCTATGGATATCCCTACTCATTCCTCTGAAGATTCAGATGAAAATTTATCCCTGGAAGCATCTGTTATGACCAGTAAGAAATCCATTTGTTCTGCAAACGATATTGACAATTTGGCAAAGGAAGTGCAAGAGGGATCATCTACTTCAGATCAAAAAATAATTAAGGAGAAGAAGAAAACAAAACGATCAAGAAAGAAGCAGCTTGTTCAGGAAGAGGAGAGGATTAGAGGTAGAGTCAGCATGAAGGTGTATTTGTCGTACATGGCAGCAGCATATAAAGGCTTGTTGATTCCACTCATAATCATTGCACAAACGTTATTTCAGTTCCTTCAGATTGCTAGCAATTGGTGGATGGCTTGGGCTAACCCTCAGACAGAAGGAGACCTGCCCAAAGTAACTCCCTCAGTTCTTCTTCTTGTTTACATGGCCCTTGCTTTTGGCAGCTCATGGTTTATATTCGTAAGGGCTGTTCTGGTGGCTACATTTGGTCTTGCAGCTGCGCAAAAGCTATTTTTGAAAATGCTTAGAAGTGTTTTCCATGCACCTATGTCTTTCTTTGACTCTACACCAGCTGGAAGGATCTTGAATCGGGTATCAATTGATCAAAGTGTTGTGGATCTTGACATTCCTTTCAGACTTGGTGGTTTTGCTTCAACAACAATACAGCTTATTGGTATTGTTGGTGTAATGACGGAAGTTACATGGCAAGTTTTGCTCTTGGTTGTCCCAATGGCTGTTGCTTGTTTGTGGATGCAGAAATACTACATGGCTTCCTCAAGGGAACTGGTTCGTATTGTTAGCATCCAGAAGTCTCCAATTATACATCTTTTTGGTGAATCAATTGCTGGAGCatctaccatcagaggttttggacaagaaaaaaggttcatgaagcggaatctctatcttcTTGATTGCTTTGCAAGACCATTCTTCTGCAGTCTTTCTGCAATTGAGTGGCTCTGCCTGCGTATGGAGTTACTGTCAACCTTTGTATTTTCTTTCTGCATGGTATTACTTGTTAGCTTTCCTCGTGGAAGTATCGATCCCAGCATGGCTGGACTTGCTGTGACATATGGCCTGAATTTAAATGCACGCCTATCACGGTGGATACTCAGCTTTTGCAAACTTGAAAATAAAATTATTTCTATTGAGAGAATTTACCAGTACAGCCAAATTCCTAGTGAAGCACCCACAATTATTGAGGAGTCTCGTCCTCCGTCCTCATGGCCGGAAAATGGGACAATCGAAATAATTGATTTGCAGGTCCGTTACAAGGAGAATCTTCCTTTGGTGCTTCATGGAGTAACATGCACATTTCCTGGTGGAAAGAAGATTGGAATAGTTGGACGTACTGGCAGTGGAAAATCTACTTTAATTCAAGCCTTATTTCGATTGATTGAACCAGCAAGTGGGAGTATCCTTATAGACAGCATTAATATTTCGGATATTGGCCTTCATGACCTTCGAAGTCATCTCAGTATCATACCACAAGATCCAACCTTATTTGAAGGGACCATTCGAGCCAATCTTGATCCTCTTGAGGAACACTCAGATAAAGAGATGTGGGAGGCACTTGATAAGTCTCAGCTTGGAGAGGTTATCCGTGAGAAAGGACAAAAGCTTGATACACCAGTTCTAGAAAATGGAGATAATTGGAGTGTTGGACAGCGACAACTTGTTGCTCTGGGCCGAGCTCTGCTGCAGCAGTCAAAAATACTTGTTCTGGATGAAGCAACAGCATCAGTTGATACTGCCACGGATAATCTTATCCAGAAGATTATCCGAAAAGAGTTCAAAGACTGCACTGTGTGCACCATTGCTCATCGTATTCCTACTGTCATCGACAGTGATCAAGTTCTTGTACTTAGTGATGGTCGAGTTGCTGAGTTTGACACTCCTACAAGGCTATTAGAGGATAAGACGTCCATGTTTCTGAAATTGGTGACTGAGTATTCCTCACGTTCAAGTGGTATACCAGATTATTAG 4605 0.4211 MAFDEISSTTLFSSFSSSLGSFDTLWSAILGLPWVEVVEICANSTLFLLFLFVFSARKCVGERVGFGKDNRTGNVGVDLETRGVRIGTWFNFSVLSCFYVLLVQVSVLGFDGVGLIKRGEGDVDVDLNLDLSLISLPLAQGLAWVVLSFSALQCKFKGCERFPILLRVWWFVSFVICLCGLYVDGRGVWMEGSRHLRSHVVGNFAATPALAFLCIVAIRGVTGIRVCRNSEEQEPLLVEEEPGCLKVTPYSDAGIFSLATLSWLNPLLSIGAKRPLELKDIPLVAQKDRSKTNYKVLNSNWERLKAESTSQQPSLAWALLKSFWKEAACNAIFAGVTTLVSYVGPYMISYFVDYLVGKEIFPHEGYVLAGIFFVAKLVETLTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSLAKQSHTSGEIVNYMAIDVQRVGDYSWYLHDMWMLPLQIVLALAILYKNVGIASIATLIATIISIVVTVPVARIQEDYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRIKLEQMRGVEFRWLRKALYSQAFITFIFWSSPIFVSAVTFGTSILLGSQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRLSGFLLEEELQEDATIVLPQGISNIAIEITDGAFCWDPSSSARPTLSGISMKVERGMRVAVCGMVGSGKSSFLSCILGEIPKLSGEVRVCGSAAYVSQSAWIQSGNIEENILFGSPMDKAKYKNVLLACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSDLFREYILTALANKTVIYVTHQVEFLPAADLILVLKEGSIIQAGKYDDLLQAGTDFKTLVSAHHEAIEAMDIPTHSSEDSDENLSLEASVMTSKKSICSANDIDNLAKEVQEGSSTSDQKIIKEKKKTKRSRKKQLVQEEERIRGRVSMKVYLSYMAAAYKGLLIPLIIIAQTLFQFLQIASNWWMAWANPQTEGDLPKVTPSVLLLVYMALAFGSSWFIFVRAVLVATFGLAAAQKLFLKMLRSVFHAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLIGIVGVMTEVTWQVLLLVVPMAVACLWMQKYYMASSRELVRIVSIQKSPIIHLFGESIAGASTIRGFGQEKRFMKRNLYLLDCFARPFFCSLSAIEWLCLRMELLSTFVFSFCMVLLVSFPRGSIDPSMAGLAVTYGLNLNARLSRWILSFCKLENKIISIERIYQYSQIPSEAPTIIEESRPPSSWPENGTIEIIDLQVRYKENLPLVLHGVTCTFPGGKKIGIVGRTGSGKSTLIQALFRLIEPASGSILIDSINISDIGLHDLRSHLSIIPQDPTLFEGTIRANLDPLEEHSDKEMWEALDKSQLGEVIREKGQKLDTPVLENGDNWSVGQRQLVALGRALLQQSKILVLDEATASVDTATDNLIQKIIRKEFKDCTVCTIAHRIPTVIDSDQVLVLSDGRVAEFDTPTRLLEDKTSMFLKLVTEYSSRSSGIPDY 1534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02254 1534 CDD ABC_6TM_ABCC_D1 329 616 IPR044746 GO:0140359
Cca03g02254 1534 CDD ABC_6TM_ABCC_D2 969 1263 IPR044726 GO:0140359
Cca03g02254 1534 Coils Coil 926 946 - -
Cca03g02254 1534 SUPERFAMILY ABC transporter transmembrane region 968 1268 IPR036640 GO:0005524|GO:0016021
Cca03g02254 1534 Gene3D - 624 886 IPR027417 -
Cca03g02254 1534 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 91 1534 - -
Cca03g02254 1534 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1288 1522 IPR003439 GO:0005524
Cca03g02254 1534 CDD ABCC_MRP_domain2 1286 1506 - -
Cca03g02254 1534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1279 1513 IPR027417 -
Cca03g02254 1534 SMART AAA_5 1314 1499 IPR003593 -
Cca03g02254 1534 SMART AAA_5 670 851 IPR003593 -
Cca03g02254 1534 Gene3D - 1271 1524 IPR027417 -
Cca03g02254 1534 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 642 866 IPR003439 GO:0005524
Cca03g02254 1534 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 971 1241 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca03g02254 1534 Gene3D ABC transporter type 1, transmembrane domain 930 1269 IPR036640 GO:0005524|GO:0016021
Cca03g02254 1534 Gene3D ABC transporter type 1, transmembrane domain 299 623 IPR036640 GO:0005524|GO:0016021
Cca03g02254 1534 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 331 608 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca03g02254 1534 Pfam ABC transporter transmembrane region 971 1212 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca03g02254 1534 Pfam ABC transporter transmembrane region 332 596 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca03g02254 1534 Pfam ABC transporter 661 795 IPR003439 GO:0005524
Cca03g02254 1534 Pfam ABC transporter 1305 1453 IPR003439 GO:0005524
Cca03g02254 1534 SUPERFAMILY ABC transporter transmembrane region 317 622 IPR036640 GO:0005524|GO:0016021
Cca03g02254 1534 ProSitePatterns ABC transporters family signature. 768 782 IPR017871 GO:0005524
Cca03g02254 1534 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 91 1534 - -
Cca03g02254 1534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 639 865 IPR027417 -
Cca03g02254 1534 CDD ABCC_MRP_domain1 642 843 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02254 Cca-Chr3 43388862 43397990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02254 652 859 Calmodulin-binding Proteins AT2G36910 31.111 1.97e-19 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02254 - - gmx:100814850 2699.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02254 03 43388862 43397990 Cca03g02254 03 43388862 43397990 ECH
Cca03g02254 03 43388862 43397990 Cca02g00966 02 25847775 25856969 PCT