Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02253 ATGAGACGGCGCCCCGTGGCGGCCCTTCTCCCCGACCAAATGGAGAAAACCACCACCAAAAACCCTAACTCCAGACTCTGCTTCCTCGCTTCCCTCTCCGCATTCTTCTGGTTCCTCCTCCTCTACTTCCACTTCACCGTTCTCCGCACCCAACCCAGCGCACCCCTCCCCGTCACTTTCCAACGACCAAAGCCCCAATTCCCCTTCGCCGCCAACGCCTCCGACCCCTGCGGCGGCCGTTACATCTACGTCCACAACCTCCCCCCGCGCTTCAACCACGACATGCTCAAGCACTGCAAGACCCTCTCCCTCTGGACCAACATGTGCAAGTTCACCACCAACGCCGGCCTCGGCCCCCCGCTCGACAACACCCACTCCGTCTTCTCCGACACCGGCTGGTACGCCACCAACCAGTTCGCCGTCGACGTCATCTTCGCCAACCGCATGAACCAGTACCAATGCCTCACCAACGACTCCTCCCTCGCCGCCGCCGTCTTCGTCCCCTTCTACGCCGGCTTCGACATCGCCCGCTACCTCTGGGGCTACAACATCTCCACGCGCGACGCCGCCTCCCTGGACCTCGTCGACTGGCTCACCAAGCAGCCCCAGTGGGGAGTCATGAACGGCAGAGATCACTTCCTCTCTAGTCCCTGGAACGCTAATGATTTTGGGATTCCCTATCCCACTTATTTCCACCCTGCAAAAGATGATGACGTCTTCATCTGGCAGGAGAGGATGCGGAGGTTGGAGAGGAAGTGGCTCTTCTCCTTCGCCGGCGCGCCGCGCCCGGGTAACGCTAAGTCGATTAGGGGTCACATTATTGAGCAGTGTAGCAGATCCAATGTGGGGAAGTTGTTGGAGTGTGATTTTGGGGAGAGTAAGTGTCATTCCCCGAGTAGCATAATGCAGATGTTTCAGGGCTCCCTTTTCTGCCTTCAACCGCAGGGGGATTCCTATACGAGGAGATCTGCTTTTGATTCAATGCTGGCTGGTTGTATACCTGTGTTTTTCCACCCCGGTTCGGCTTATACACAATACACATGGCACCTTCCTAAGGATTATACCAAATACTCGGTTTTCATTCCGGAGGACGATATTCGGAAGAGGAATGTTAGTATAGAGGAGAGGCTTAGGCGGATTCCTGAGGAGGAGGTTAGGATTATGAGGGAGGAGGTTATTAGTTTGATTCCTAGGTTGGTGTATGCGGATCCGCGATCCAAGCTGGAGACGCTTAAGGATGCGTTTGATGTTTCTGTGCAGGCGGTGATTGATAAGGTTACCAATTTGAGGAAGGATATCATGGAGGGTCGGACGGATGAGAACTTCATTGAGGAGAATAGTTGGAAGTATGCGTTGTTGGATGAGGGACAGCGTGAGGTTGGGCCTCATGAGTGGGATCCTTTCTTTTCCAAGCCCAAGGATGGCAATGGGGATTCTGAAACTCTTGGAACTTACATAGTTCAGCTCCACCCTCATGGCACAACCAGCTCTGCCTTCACCTCCAAGCTCAAATGGCACCTTTCATTTATCCAACAGACCATTTCCTCCGATGAGGACCCTTCCTCGCGCCTCCTCTACTCTTACCGTTCCGCCATGGATGGTTTCGCAGCTCAGCTAACTGAGTCTGAGCTTGAGTTCCTCAAAAACTTGCCTGATGTTATCTCAATTAGGCCCGACAGAAGCCTCCAAATTCAGACCACTTATTCTTACAAGTTCCTGGGGCTTAACCCCGCCAGAGAAAACGGTTGGTACCAATCTGGTTTTGGCCGCGGAACCATTATTGGAGTGCTTGACACTGGAGTGTGGCCAGAGAGTCCTAGCTTCAATGATCATGGCATGCCTCCAGTTCCCAAGAAATGGAAGGGTATATGCCAAGCTGGGAAGGCCTTTAACTCTTCCAATTGTAACAGAAAACTTATTGGTGCAAGGTACTTCACCAAAGGCCATTTTTCTGTGTCACCTTACAAAATTCACGAATATCTCTCCCCAAGAGACTCCTCTGGACATGGCACACACACTTTGTCCACCGCTGGAGGAGTGCCAGTGCTGAATGCAAGCGTGTTTGGTTATGCATCTGGCGTGGCAAGAGGAATGGCTCCTGGTGCCCACATTGCAGTGTACAAAGTGTGTTGGTTCAATGGCTGCTATAACTCTGACATCATGGCTGCAATGGATGTGGCCATCAGAGATGGGGTGGACATTCTCTCCTTGTCTCTAGGTGGCTTCTCTTTGCCTCTATATGATGATAGTATTGCCATTGGAAGCTTTAGAGCAATGGAGCATGGGATTTCAGTTATATGTGCAGCAGGAAACAATGGTCCAACAGAGATGTCTGTTGCCAATGAGGCTCCTTGGATTGCCACTATTGGTGCAAGCACACTAGACAGGAGATTCCCAGCTATAGTTCGCATGGGAAATGGACAAGTCCTCTATGGAGAATCCATGTACCCGCTGAACCATCCAATGAGCAACGGAAAAGAACTTGAGGTGGTTTATGTTAACGAAGGGGATGCTGAGAGTCAATTTTGCCTCAGAGGGTCTCTTCCAAGGGACAAAGTTAAAGGAAAAATGGTGGTGTGTGATCGAGGCGTCAATGGAAGATCAGAAAAGGGCCAAGTGGTGAAGGAGGCAGGTGGTGTTGCTATGATCCTCGCAAACACGGAGATAAACTTGGGAGAGGATTCTGTTGATGTTCATGTCTTGCCTGCAACTTTGGTAGGATTTGATGAAGCAGTCACCTTGAAAAGTTACATAAACTCTACAACAAGGCCTCTTGCTAGGATTGAATTTGGAGGAACTGTGATAGGGAAGTTTAGAGCACCATCAGTGGCAAGGTTTTCAGCTAGAGGACCTAGTTTCACAAACCCTTCAATCCTCAAACCAGATGTTATAGCTCCAGGAGTGAACATCATTGCTGCATGGCCTCAGAACCTAGGTCCAACCGGCCTTCCAGAGGATACTAGAAGAGTTAACTTCTCTGTCATGTCTGGTACCTCAATGTCATGCCCTCATGTCAGTGGAATTGCTGCTCTCATTCGCTCGGCTCACCCGAAATGGACCCCTGCGGCAATCAAATCAGCAATCATGACAACAGCCGAGGTAACCGATCACACCGGAAGGCCAATACTTGATGAAGACCAACCAGCTGGAGTTTTTGACATGGGAGCTGGACATGTGAATCCACAAAGAGCATTGAACCCTGGACTGGTGTATGACATTAGGCCAGATGACTATATCATCCACCTTTGCAGCCTTGGATACACAAGGTCAGAAATGTTGGGCATCACACACAGAAATGTGAGTTGCAATACAATCATGCAGATGAATAGAGGCTTCAGCCTTAACTATCCCTCATTCTCAGTCATTTTCAAGGGTGGGGCGAGGAGAAAGATGTTCACCAGGAGACTAACAAATGTGGGAAGTCCTAACTCCATCTACTCGGTGGAAGTTAAGGCACCTGAAGGAGTGAAAGTGATAGTGAAACCCAAGCGGCTTGTATTTAAACAAGTGAATCAAAGCTTGAGTTACAGGGTGTGGTTTATATCAAGAAAAAGGGTCAAAAAAGGTGATAATTTGGTGTCCTATGCAGAAGGGCATTTGACATGGGTGCACTCTCAAAATGGTTCTTACAGGGTTAGAAGCCCGGTAGCAGTGACTTGGAAGTCAAAGTAG 3672 0.5011 MRRRPVAALLPDQMEKTTTKNPNSRLCFLASLSAFFWFLLLYFHFTVLRTQPSAPLPVTFQRPKPQFPFAANASDPCGGRYIYVHNLPPRFNHDMLKHCKTLSLWTNMCKFTTNAGLGPPLDNTHSVFSDTGWYATNQFAVDVIFANRMNQYQCLTNDSSLAAAVFVPFYAGFDIARYLWGYNISTRDAASLDLVDWLTKQPQWGVMNGRDHFLSSPWNANDFGIPYPTYFHPAKDDDVFIWQERMRRLERKWLFSFAGAPRPGNAKSIRGHIIEQCSRSNVGKLLECDFGESKCHSPSSIMQMFQGSLFCLQPQGDSYTRRSAFDSMLAGCIPVFFHPGSAYTQYTWHLPKDYTKYSVFIPEDDIRKRNVSIEERLRRIPEEEVRIMREEVISLIPRLVYADPRSKLETLKDAFDVSVQAVIDKVTNLRKDIMEGRTDENFIEENSWKYALLDEGQREVGPHEWDPFFSKPKDGNGDSETLGTYIVQLHPHGTTSSAFTSKLKWHLSFIQQTISSDEDPSSRLLYSYRSAMDGFAAQLTESELEFLKNLPDVISIRPDRSLQIQTTYSYKFLGLNPARENGWYQSGFGRGTIIGVLDTGVWPESPSFNDHGMPPVPKKWKGICQAGKAFNSSNCNRKLIGARYFTKGHFSVSPYKIHEYLSPRDSSGHGTHTLSTAGGVPVLNASVFGYASGVARGMAPGAHIAVYKVCWFNGCYNSDIMAAMDVAIRDGVDILSLSLGGFSLPLYDDSIAIGSFRAMEHGISVICAAGNNGPTEMSVANEAPWIATIGASTLDRRFPAIVRMGNGQVLYGESMYPLNHPMSNGKELEVVYVNEGDAESQFCLRGSLPRDKVKGKMVVCDRGVNGRSEKGQVVKEAGGVAMILANTEINLGEDSVDVHVLPATLVGFDEAVTLKSYINSTTRPLARIEFGGTVIGKFRAPSVARFSARGPSFTNPSILKPDVIAPGVNIIAAWPQNLGPTGLPEDTRRVNFSVMSGTSMSCPHVSGIAALIRSAHPKWTPAAIKSAIMTTAEVTDHTGRPILDEDQPAGVFDMGAGHVNPQRALNPGLVYDIRPDDYIIHLCSLGYTRSEMLGITHRNVSCNTIMQMNRGFSLNYPSFSVIFKGGARRKMFTRRLTNVGSPNSIYSVEVKAPEGVKVIVKPKRLVFKQVNQSLSYRVWFISRKRVKKGDNLVSYAEGHLTWVHSQNGSYRVRSPVAVTWKSK 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02253 1223 PRINTS Subtilisin serine protease family (S8) signature 665 678 IPR015500 -
Cca03g02253 1223 PRINTS Subtilisin serine protease family (S8) signature 996 1012 IPR015500 -
Cca03g02253 1223 PRINTS Subtilisin serine protease family (S8) signature 589 608 IPR015500 -
Cca03g02253 1223 SUPERFAMILY Subtilisin-like 565 1069 IPR036852 GO:0004252|GO:0006508
Cca03g02253 1223 ProSitePatterns Serine proteases, subtilase family, serine active site. 997 1007 IPR023828 -
Cca03g02253 1223 Pfam PA domain 829 912 IPR003137 -
Cca03g02253 1223 Pfam Subtilase family 589 1044 IPR000209 GO:0006508|GO:0008236
Cca03g02253 1223 CDD Peptidases_S8_3 562 1032 IPR034197 -
Cca03g02253 1223 Gene3D - 795 935 - -
Cca03g02253 1223 ProSiteProfiles Serine proteases, subtilase domain profile. 567 1065 - -
Cca03g02253 1223 Pfam Exostosin family 77 219 IPR040911 -
Cca03g02253 1223 Pfam Exostosin family 216 376 IPR040911 -
Cca03g02253 1223 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 470 565 IPR037045 -
Cca03g02253 1223 SUPERFAMILY Protease propeptides/inhibitors 506 564 - -
Cca03g02253 1223 Pfam Peptidase inhibitor I9 484 564 IPR010259 -
Cca03g02253 1223 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 479 1220 IPR045051 -
Cca03g02253 1223 CDD PA_subtilisin_like 802 928 - -
Cca03g02253 1223 Gene3D - 1082 1220 - -
Cca03g02253 1223 Pfam Fibronectin type-III domain 1114 1218 IPR041469 -
Cca03g02253 1223 Gene3D Peptidase S8/S53 domain 591 1078 IPR036852 GO:0004252|GO:0006508
Cca03g02253 1223 SUPERFAMILY PA domain 806 892 IPR046450 -
Cca03g02253 1223 PANTHER SUBTILISIN-LIKE PROTEASE SBT1.2 479 1220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02253 Cca-Chr3 43375580 43385302 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02253 484 1222 Subtilisin-like Serine Gene Family AT1G04110 69.159 0.0 1086
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02253 - - pvu:PHAVU_001G165300g 2032.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02253 03 43375580 43385302 Cca03g02253 03 43375580 43385302 ECH
Cca03g02253 03 43375580 43385302 Cca02g00968 02 25873748 25876330 PCT