Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02252 ATGAAGAAGAACAAGATGCAAATGAAAATGCAGCTTTTCATCTTCTTCTGTTACATTGGTTGTTTCTCCTATAGTTTTGCTGCTGCTGCCACAAATGATGAAGTATCAGCTTTGCTTTCTATAAAAGAAGGTCTCGTTGATCCGTTGAACACCCTTCGAGATTGGAAACTGCATGACAATGAACCAGGAAAGGATGCAGCTCACTGTAACTGGACTGGCATCAAATGCAACTCAGCTGGAGCAGTAGAGAAGCTTGACCTCTCCCACAAGAATCTCAGTGGCAGGGTATCCAATGATATACAAAGACTTAAAAGTCTTGCTTCACTTAATTTGTGTTGCAATGCTTTTTCATCCCCATTGCCTAAATCCATAGCCAATCTCACCACACTTAACAGTCTTGATGTAAGCCAAAATTTCTTCATTGGTGACTTTCCATTAGGCCTTGGAAGGGCATGGAGACTTATAGCCTTAAATGCATCCAGCAATGATTTCTCAGGTTCTCTTCCTGAGGACCTTGGAAGTGCCTCTTCCTTAGAGATGCTGGATCTCAGAGGCAGCTTCTTTGTAGGGTCAGTTCCAAAATCATTCAGCAACTTGCATAAGTTGAAGTTCCTTGGTCTATCTGGGAACAATCTCACTGGTAAAATTCCTGGAGAGCTGGGACAACTTTCATCACTGGAGTATATGATCCTTGGGTATAATGAATTTGAAGGTGGTATTCCAGAAGAGTTTGGCAATCTCACTAATCTTAAGTATCTTGATTTAGCAGTAGCCAATCTTGGTGGTGAGCTTCCAAGAGGATTGGGAGAACTCAAGTTATTGAATACAGTTTTCTTATACAACAACAATTTTGAAGGCAGAATTCCAACAGCAATTGGCAACATGACTTCTTTGCAGTTGCTGGATCTTTCTGATAACATGTTGTCTGGAAAAATTCCAGCTGAAATAAGTCAGCTGAAGAATATGAAGCTTCTTAACTTGATGGGAAACCAGCTGTCTGGTCCTGTGCCTTCTGGCTTTGGAGATTTGCCACAATTGGAGGTACTTGAGCTATGGAACAATTCCTTGTCAGGTCCATTGCCTAGTAACCTTGGCAAGAATTCACCATTGCAATGGTTGGATGTCTCATCCAATTCACTCTCTGGAGAGATTCCAGAAACTCTTTGCAGCCAGGGCAATCTCACCAAGCTCATACTATTCAACAATGCCTTCTCTGGTCCAATTCCATCGAGCCTATCAATATGTCCTTCACTTGTTCGTGTTCGAATTCAGAACAATTTCCTTTCTGGGACAGTTCCTGTGGGTCTTGGCAAGCTTGGGAAGCTTCAAAGGTTAGAATTGGCTAACAATAGTCTTTCAGGTGGAATTCCAGATGACATTGCTTCTTCCACATCCCTTTCCTTCATTGATCTCTCAAGAAACAAACTCCATTCTTCTCTTCCTTCCACTGTCCTTTCAATTCCAAATCTGCAAGCTTTCATGGTCTCCAACAACAACTTGGAAGGTGAAATCCCAGACCAGTTCCAGGACTGTCCATCCCTGGCAGTTCTTGATCTCTCATCAAATCATCTATCTGGAAGCATTCCAGCAAGCATTGCTTCATGTCAGAAGTTGGTAAATTTGAACCTCCAAAACAACCAATTCACTGGTGAAATCCCAAAAGCACTAGCTAAGATGCCTACATTGGCCATGCTTGATCTTTCCAAAAATTCCTTGACAGGCCAAATACCTGAAAGCTTTGGAATTTCTCCAGCCCTGGAAGCACTCAATGTCTCATACAATAAGCTAGAAGGTCCAGTCCCAGCAAATGGAATACTAAGAACTATAAACCCAAATGATCTTGTGGGCAATGCTGGCCTATGTGGTGGTGTCCTCCTTCCATGTGACCAAAATTCTGCATACTCATCAAGGCGTGGAAGCTCACGTGCAAAGCACATTGCCACAGCTTGGATCACTGGAATATCAACAATCCTAGTTATTGGTATTGCAATTTTGGTAGCAAGATCTTTGTACGTAAGATGGTACACGGAAGGGTTTTGCTTCCAAGAAAGATTCTATAAGGGTGGCAAAGGGTGGCCTTGGAGATTGATGGCATTTCAGAGGCTTAGTTTTACAAGTACTGACATTCTAGCTTGCATCAAGGAAACAAATGTGATTGGAATGGGAGCCACAGGGGTGGTTTATAAGGCTGAGATACCACAATCAAATACAGTTGTGGCAGTGAAAAAACTGTGGAGAACAGGAACTGATATTGAAGTGGGAGGCAGTGATGACCTCTTGGGAGAGGTTAATGTTTTAGGGAGGCTAAGGCATAGGAACATTGTTAGACTATTAGGATTTCTTCATAATGACGTTGATGTGATGATAGTTTATGAATTCATGCATAATGGCAACCTGGGAGATGCCTTGCATGGTAGACAAACAACAAGACTTCTTGTAGACTGGGTTTCACGCTATAACatagctctaggagttgcacaaggacttgcttatcttcatcatgattgtcatccacccgttattcatcgagacatcaagtcaaataacatattgcttgatgcaaatcttgaggcaaggatagcagatttcggtttagccaagatGATGATCCGGAAGAATGAAACAGTCTCCATGGTTGCTGGATCCTATGGCTACATTGCCCCTGAATATGGATATGCCTTGAAGGTGGATGAGAAGATTgatgtttacagttatggagtagttttgttggagcttctcacaggaaagaggCCCTTGGAGCCAGACTTTGGAGAGTCAATAGACATAGTAGAGTGGATCAGAATGAAGATTAGAGACAACAAATCTCTAGAAGAAGCATTAGACCCTAGTGTAGGAAACAGCAGGCATGTTGTGGAAGAGATGCTTTTAGTTCTAAGAATAGCAATTCTTTGCACTGCCAAGCTCCCTAAGGACAGACCAACCATGAGGGATGTCATAATGATGCTTGGAGAGGCAAAGCCTCGCAGGAAGAGCAGTGGCAACGATGCAGCTAACAGCAAAGAGACCCCAGTTTTTAGCACTTCACCAGTTAATGGGCTAATGTAG 3066 0.3995 MKKNKMQMKMQLFIFFCYIGCFSYSFAAAATNDEVSALLSIKEGLVDPLNTLRDWKLHDNEPGKDAAHCNWTGIKCNSAGAVEKLDLSHKNLSGRVSNDIQRLKSLASLNLCCNAFSSPLPKSIANLTTLNSLDVSQNFFIGDFPLGLGRAWRLIALNASSNDFSGSLPEDLGSASSLEMLDLRGSFFVGSVPKSFSNLHKLKFLGLSGNNLTGKIPGELGQLSSLEYMILGYNEFEGGIPEEFGNLTNLKYLDLAVANLGGELPRGLGELKLLNTVFLYNNNFEGRIPTAIGNMTSLQLLDLSDNMLSGKIPAEISQLKNMKLLNLMGNQLSGPVPSGFGDLPQLEVLELWNNSLSGPLPSNLGKNSPLQWLDVSSNSLSGEIPETLCSQGNLTKLILFNNAFSGPIPSSLSICPSLVRVRIQNNFLSGTVPVGLGKLGKLQRLELANNSLSGGIPDDIASSTSLSFIDLSRNKLHSSLPSTVLSIPNLQAFMVSNNNLEGEIPDQFQDCPSLAVLDLSSNHLSGSIPASIASCQKLVNLNLQNNQFTGEIPKALAKMPTLAMLDLSKNSLTGQIPESFGISPALEALNVSYNKLEGPVPANGILRTINPNDLVGNAGLCGGVLLPCDQNSAYSSRRGSSRAKHIATAWITGISTILVIGIAILVARSLYVRWYTEGFCFQERFYKGGKGWPWRLMAFQRLSFTSTDILACIKETNVIGMGATGVVYKAEIPQSNTVVAVKKLWRTGTDIEVGGSDDLLGEVNVLGRLRHRNIVRLLGFLHNDVDVMIVYEFMHNGNLGDALHGRQTTRLLVDWVSRYNIALGVAQGLAYLHHDCHPPVIHRDIKSNNILLDANLEARIADFGLAKMMIRKNETVSMVAGSYGYIAPEYGYALKVDEKIDVYSYGVVLLELLTGKRPLEPDFGESIDIVEWIRMKIRDNKSLEEALDPSVGNSRHVVEEMLLVLRIAILCTAKLPKDRPTMRDVIMMLGEAKPRRKSSGNDAANSKETPVFSTSPVNGLM 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02252 1021 SMART LRR_typ_2 199 223 IPR003591 -
Cca03g02252 1021 SMART LRR_typ_2 343 367 IPR003591 -
Cca03g02252 1021 SMART LRR_typ_2 439 463 IPR003591 -
Cca03g02252 1021 SMART LRR_typ_2 487 510 IPR003591 -
Cca03g02252 1021 SMART LRR_typ_2 295 319 IPR003591 -
Cca03g02252 1021 SMART LRR_typ_2 247 271 IPR003591 -
Cca03g02252 1021 SMART LRR_typ_2 511 535 IPR003591 -
Cca03g02252 1021 Pfam Protein kinase domain 715 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02252 1021 Pfam Leucine rich repeat N-terminal domain 32 77 IPR013210 -
Cca03g02252 1021 Gene3D Phosphorylase Kinase; domain 1 713 797 - -
Cca03g02252 1021 PANTHER UNNAMED PRODUCT 8 1001 - -
Cca03g02252 1021 Gene3D Ribonuclease Inhibitor 319 390 IPR032675 -
Cca03g02252 1021 SUPERFAMILY Protein kinase-like (PK-like) 709 989 IPR011009 -
Cca03g02252 1021 MobiDBLite consensus disorder prediction 1003 1021 - -
Cca03g02252 1021 MobiDBLite consensus disorder prediction 993 1021 - -
Cca03g02252 1021 Gene3D Ribonuclease Inhibitor 152 259 IPR032675 -
Cca03g02252 1021 Gene3D Ribonuclease Inhibitor 33 151 IPR032675 -
Cca03g02252 1021 Gene3D Ribonuclease Inhibitor 260 318 IPR032675 -
Cca03g02252 1021 ProSiteProfiles Protein kinase domain profile. 713 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02252 1021 SMART serkin_6 713 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02252 1021 Gene3D Ribonuclease Inhibitor 391 632 IPR032675 -
Cca03g02252 1021 Gene3D Transferase(Phosphotransferase) domain 1 798 1014 - -
Cca03g02252 1021 SUPERFAMILY RNI-like 279 598 - -
Cca03g02252 1021 ProSitePatterns Protein kinases ATP-binding region signature. 719 743 IPR017441 GO:0005524
Cca03g02252 1021 Pfam Leucine rich repeat 177 235 IPR001611 GO:0005515
Cca03g02252 1021 Pfam Leucine rich repeat 274 332 IPR001611 GO:0005515
Cca03g02252 1021 Pfam Leucine rich repeat 488 548 IPR001611 GO:0005515
Cca03g02252 1021 SUPERFAMILY L domain-like 67 358 - -
Cca03g02252 1021 ProSitePatterns Serine/Threonine protein kinases active-site signature. 840 852 IPR008271 GO:0004672|GO:0006468
Cca03g02252 1021 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 8 1001 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02252 Cca-Chr3 43363841 43367578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02252 11 1021 Receptor kinase-like Gene Family AT1G08590 60.058 0.0 1182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca03g02252 Pkinase 5.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02252 - - gmx:100811284 1842.78