Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02251 ATGTCTAAAGATGATAACTCTTCACAGGACTCTTCATCTCATCTTCAATTGGCTCTCTCCTTAACCCTctctccctatgcctctgcttcctccgtttctgcctctCATTCTCTTCTTCCCGCTACCACTCCCACTCCCAGTCAAGTTGTTGGATGGCCTCCACTTGGAGCATATAGAATGAACAGCTATAATAGTCATGCAAAATCACCAGCCACGGAAGTAGTCGATTCTATAGTTGACAAAAGAGCAAGCAATAGTTCTGGGGTAAGGAAGAGTGCAGATGGAGGCAGTGATAGTAGCAACATTATTTCCAAAGAAAAAGGAAACCTCAGGAGTTCCCTGTTTGTGAAAGTAAAAATGGATGGGATACCAATTGGAAGGAAGGTTGATTTGAGTGCTCATGGTTCCTATGAAACCTTAGCTCAAACCTTGGAGGATATGTTTGATGAATCAGCTACAGTCCTTACTCACAAAGTAGGATCAAATGCAGAAGATGGGCATTCAAAATTGCTGGATGGTTCTTCTGACTTTGTGCTTACTTATGAAGACAAGGAAGGAGACTGGATGCTTGTTGGAGATGTTCCTTGGTGGATGTTCCTTAGCTCTGTGAGGAGGCTAAGAATCATGAGGACACCTGATGCTAATGGGCTTGCTCCAAGATTGGAAGAAAAGAACAGGAGATCGAATTGCAAGCCCATATAG 702 0.406 MSKDDNSSQDSSSHLQLALSLTLSPYASASSVSASHSLLPATTPTPSQVVGWPPLGAYRMNSYNSHAKSPATEVVDSIVDKRASNSSGVRKSADGGSDSSNIISKEKGNLRSSLFVKVKMDGIPIGRKVDLSAHGSYETLAQTLEDMFDESATVLTHKVGSNAEDGHSKLLDGSSDFVLTYEDKEGDWMLVGDVPWWMFLSSVRRLRIMRTPDANGLAPRLEEKNRRSNCKPI 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02251 233 ProSiteProfiles PB1 domain profile. 113 213 IPR000270 GO:0005515
Cca03g02251 233 Gene3D - 108 223 - -
Cca03g02251 233 MobiDBLite consensus disorder prediction 82 104 - -
Cca03g02251 233 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 9 224 - -
Cca03g02251 233 Pfam AUX/IAA family 41 220 IPR033389 -
Cca03g02251 233 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 224 IPR003311 GO:0005634|GO:0006355
Cca03g02251 233 SUPERFAMILY CAD & PB1 domains 109 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02251 Cca-Chr3 43357811 43362141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02251 33 222 B3 DNA Binding Superfamily AT3G61830 27.368 5.70e-14 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Cca03g02251 AUX_IAA 8.2e-57 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02251 K14484 - gmx:100789143 348.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02251 03 43357811 43362141 Cca03g02251 03 43357811 43362141 ECH
Cca03g02251 03 43357811 43362141 Cca02g00972 02 25934679 25940103 PCT