Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02245 ATGGCGCCCAATCCGAGAGTGGTGGCGGCCTTTACGGCAATGGCGAATCTCGGGATTCACGAATCAAAAGTGAAACCGGTGTTGAAGAAACTGCTTAAATTGTATGATAAAAACTGGCAACTAATTGAAGAAGAGAGTTATAGGGCCCTGGCAGATGCAATATTCGAGGAGGAAGAAAATCAGGTGGCGGAGCCAGACCAGAATAATAAAAACAAGGATGGAGTAGATGATGAAGAGGCTCGTACACATGAGGCGCCTTTGCGACCTTTGAAGAGGTTGCGTTTGAGAGGTCAAGAGGGTCAATCTTCACGCCCTATGACTATGACTAGTGGTGGCCCCAGCTCGGGTGCCTTTCCATTGAAAACGCCTAAATTAGAAGATGGCACTGTGCCTGAAAGTAGTTCCAGATTGCAGCCTCAAAGCACAGCAGCGTTATCCGATGGAAATGCAAGGGTTGATGCTCGTCGTGTTCCCCCACAAGATGCTGTTGTTGACAAGGGAAAGCAACCTTTATCACCTCAAGTTACTCCTAGAGGGAGAAGATCTACATCTGACAGAAGCCCCCTTGCAGAAACACTTAAAGGGCCAACAGTTGAGCCAGGAGCCACTCCGACAGCAAATAAAAAAATGCCTCCTCCATTTATTTTTATCAAGCCCAAGGATGAGCCTGTTGATGAATTGCCAGATTATGAGATTATTCCCATTTCAGTGATTCTTCCTGAACCATCAAGTGGAAGAGACTCTCTAATGGGGGAAGCTGAGAACCAAGATGGCCATGACACTGTGTTATCACAGTGCAGAGATGAAGATGTTGAAGGTGAAGATATTCTTCCTTCCTATAATGAAGAAGCAACTTCTAATGTCAATGTAGTCTTGTCATCTACGAGAGAGGAACACTCTTTAAAGATAGCACAAGCTGACGATGTTGCAAAGGAATTTGAGACCAATGGCTCACCAATTTTTGGAGTAAATAAAGATTCAGTCATGGCAAATGGATCAGTTAGTGTCAAGTCTTCTTCTACCGTGGATGCACCTCATGTTCCTAGTTCTCTACCCTGTCCGAGTGATATAGATGATGCTGTAGTAGTTTCCAAGAAGGTTGGAATGAATGATTTATTACAAAGTAATGGAGGGAAGGAGCTGGAGGGGCCTATATCCCCAAATTCATGTACTTTAGTGGTTGTTCCAAAACATCAGCTTACAACTGACAATATAGGAACTGTTCATGATGTTAATGACCTAACAAAAGGAGAAGAAAGAGTGAAGATTTCATGGGTGAATAACACTACTAATGATTTCCCACCACCCTTTCACTACATACCCCGAAACCTTGTGTTCCGAGATGCTTATGTTAATATTTCTCTATCTCGTATTGGGAATGAGGATTGTTGTTCAGCTTGTTTGGGCAATTGTGTATTGTCATCTAAACCATGTTCTTGTACAAATAAAACTGGGGGTGAATTTGCTTACACTGCACAAGGCCTACTAAAGGAAGAGTTCTTGGAGGAGTGTATTGCCATCAGCCGTGATCCTCAAAATTATTTCTATTGCAAAGCCTGTCCACTTGAAACATCAAAGAATGATGATTGTTTAGAACCTTGTAAAGGACACTTAAAGAGGAAGTTTATTAAAGAGTGCTGGAGCAAATGTGGGTGTGGGAAACATTGTGGAAATCGGGTTGTCCAGCGTGGAATATCTTGCAATTTGCAGGTGTTTTTGACTTCAGATGGAAAAGGGTGGGGTCTTCGTACCTTAGATGATCTTCCAAAAGGTGCATTTGTATGTGAGTTTGTTGGGGAAATTTTAACCGCCAAAGAGTTGCATGACAGGAACATGAAATATCCCAAAAATGGGAAATATACATACCCAATTTTATTGGATGCGGATTGGGGTTCTGGAATTGTGAAGGATAGTGAAGCTCTTTGCTTGTATGCAGCATCATATGGAAATGCTGCTAGATTTATTAATCACAGATGTTTGGATGCAAACTTGATTGAGATCCCAGTTGAAATTGAGGGCCCATCTCATCACTATTATCATTTTGCCTTCTTCACATCCAGAAAAATAGCAGCGCAGGAAGAGCTCACTTGGGATTATGGCATCAACTTTGATGAACATGATGAGCCTGTTGAGCTGTTCCAGTGCAGATGTGGCAGTAAATTCTGCAGGAATATTAAGCGATCAAATAGATCCAACAGATCTTCAATTGCATAA 2214 0.4223 MAPNPRVVAAFTAMANLGIHESKVKPVLKKLLKLYDKNWQLIEEESYRALADAIFEEEENQVAEPDQNNKNKDGVDDEEARTHEAPLRPLKRLRLRGQEGQSSRPMTMTSGGPSSGAFPLKTPKLEDGTVPESSSRLQPQSTAALSDGNARVDARRVPPQDAVVDKGKQPLSPQVTPRGRRSTSDRSPLAETLKGPTVEPGATPTANKKMPPPFIFIKPKDEPVDELPDYEIIPISVILPEPSSGRDSLMGEAENQDGHDTVLSQCRDEDVEGEDILPSYNEEATSNVNVVLSSTREEHSLKIAQADDVAKEFETNGSPIFGVNKDSVMANGSVSVKSSSTVDAPHVPSSLPCPSDIDDAVVVSKKVGMNDLLQSNGGKELEGPISPNSCTLVVVPKHQLTTDNIGTVHDVNDLTKGEERVKISWVNNTTNDFPPPFHYIPRNLVFRDAYVNISLSRIGNEDCCSACLGNCVLSSKPCSCTNKTGGEFAYTAQGLLKEEFLEECIAISRDPQNYFYCKACPLETSKNDDCLEPCKGHLKRKFIKECWSKCGCGKHCGNRVVQRGISCNLQVFLTSDGKGWGLRTLDDLPKGAFVCEFVGEILTAKELHDRNMKYPKNGKYTYPILLDADWGSGIVKDSEALCLYAASYGNAARFINHRCLDANLIEIPVEIEGPSHHYYHFAFFTSRKIAAQEELTWDYGINFDEHDEPVELFQCRCGSKFCRNIKRSNRSNRSSIA 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02245 737 Pfam SET domain 579 700 IPR001214 GO:0005515
Cca03g02245 737 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 736 - -
Cca03g02245 737 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 733 IPR025776 -
Cca03g02245 737 CDD SET_SETDB-like 435 700 - -
Cca03g02245 737 MobiDBLite consensus disorder prediction 63 98 - -
Cca03g02245 737 MobiDBLite consensus disorder prediction 58 213 - -
Cca03g02245 737 MobiDBLite consensus disorder prediction 100 116 - -
Cca03g02245 737 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 GO:0018024
Cca03g02245 737 ProSiteProfiles SET domain profile. 567 700 IPR001214 GO:0005515
Cca03g02245 737 MobiDBLite consensus disorder prediction 128 147 - -
Cca03g02245 737 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 736 - -
Cca03g02245 737 ProSiteProfiles Pre-SET domain profile. 470 564 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca03g02245 737 Gene3D - 1 60 IPR043017 -
Cca03g02245 737 Pfam Pre-SET motif 415 559 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca03g02245 737 Gene3D SET domain 397 709 IPR046341 -
Cca03g02245 737 SMART preset_2 411 551 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca03g02245 737 SMART set_7 567 706 IPR001214 GO:0005515
Cca03g02245 737 MobiDBLite consensus disorder prediction 175 190 - -
Cca03g02245 737 SUPERFAMILY SET domain 421 723 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02245 Cca-Chr3 43287606 43293151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02245 413 723 Su(var)3-9 homologs AT1G73100 31.098 1.01e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca03g02245 Pre-SET 5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02245 - - gmx:100809678 1174.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02245 03 43287606 43293151 Cca03g02245 03 43287606 43293151 ECH
Cca02g00977 02 25983747 25990919 Cca03g02245 03 43287606 43293151 PCT